EY728507

Overview
NameEY728507
Unique NameEY728507
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: RCE1_ARATH (NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thaliana GN=RCE1 PE=1 SV=1)

HSP 1 Score: 228.024 bits (580), Expect = 5.477e-59
Identity = 104/114 (91.23%), Postives = 109/114 (95.61%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            GYY  GTFVFTFQVSP+YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PN EDPLNH+AAAVLRDNPKLFE+NVRRAM GGYVGQTFF RCI
Sbjct:   71 GYYHNGTFVFTFQVSPVYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNSEDPLNHDAAAVLRDNPKLFETNVRRAMTGGYVGQTFFPRCI 184          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UB12L_ARATH (Probable NEDD8-conjugating enzyme Ubc12-like OS=Arabidopsis thaliana GN=RCE2 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.813e-55
Identity = 99/114 (86.84%), Postives = 105/114 (92.11%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            GYY+ G FVF+FQVS +YPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINT+IYGLFHLFT+PNYEDPLNHEAAAVLRDNPK FE NVRRAM GG VGQT F RC+
Sbjct:   72 GYYLSGNFVFSFQVSNMYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTVIYGLFHLFTEPNYEDPLNHEAAAVLRDNPKTFEYNVRRAMMGGQVGQTSFPRCM 185          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_XENTR (NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropicalis GN=ube2m PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.488e-44
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:   69 GFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_XENLA (NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis GN=ube2m PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 8.488e-44
Identity = 80/114 (70.18%), Postives = 96/114 (84.21%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y GG FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:   69 GFYKGGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_MOUSE (NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=Ube2m PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.213e-43
Identity = 79/114 (69.30%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:   69 GFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_HUMAN (NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=UBE2M PE=1 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.213e-43
Identity = 79/114 (69.30%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:   69 GFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_BOVIN (NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UBE2M PE=2 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 4.213e-43
Identity = 79/114 (69.30%), Postives = 95/114 (83.33%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y  G FVF+F+V   YPH+ PKVKC+T VYHPNIDLEGNVCLNILREDWKPVL IN+IIYGL +LF +PN EDPLN EAA VL++N +LFE NV+R+M GGY+G T+F RC+
Sbjct:   69 GFYKSGKFVFSFKVGQGYPHDPPKVKCETMVYHPNIDLEGNVCLNILREDWKPVLTINSIIYGLQYLFLEPNPEDPLNKEAAEVLQNNRRLFEQNVQRSMRGGYIGSTYFERCL 182          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_DROME (NEDD8-conjugating enzyme Ubc12 OS=Drosophila melanogaster GN=CG7375 PE=1 SV=1)

HSP 1 Score: 165.236 bits (417), Expect = 4.360e-40
Identity = 76/114 (66.67%), Postives = 91/114 (79.82%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFFIRCI 354
            G+Y  G FVF F+V   YPHE PKVKC T+VYHPNIDL+GNVCLNILREDW PVLNIN+I+YGL  LF +PN EDPLN EAA VL+ N + FE+NV++AM GG VG+T+F  C+
Sbjct:   66 GFYRDGRFVFNFRVGSNYPHEPPKVKCATQVYHPNIDLDGNVCLNILREDWNPVLNINSIVYGLQFLFLEPNPEDPLNKEAADVLQTNRRQFENNVKKAMRGGCVGETYFECCL 179          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_SCHPO (NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomyces pombe GN=ubc12 PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 6.097e-34
Identity = 68/110 (61.82%), Postives = 78/110 (70.91%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYVGQTFF 342
            GYY GG F F  Q+   YPH+ PKVKC  K+YHPNID+EGNVCLNILR+DW PVLN+N+I+ GL  LF  PN EDPLN EAAA L  +P+ F S VR AM GG V    F
Sbjct:   63 GYYKGGKFKFRIQIDDNYPHDPPKVKCLNKIYHPNIDIEGNVCLNILRQDWNPVLNLNSILVGLQFLFLSPNAEDPLNKEAAADLHKDPQGFASRVRTAMKGGLVNGISF 172          
BLAST of EY728507 vs. ExPASy Swiss-Prot
Match: UBC12_YARLI (NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolytica GN=UBC12 PE=3 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 2.317e-33
Identity = 67/110 (60.91%), Postives = 84/110 (76.36%), Query Frame = 1
Query:   13 GYYVGGTFVFTFQVSPIYPHEAPKVKCKTKVYHPNIDLEGNVCLNILREDWKPVLNINTIIYGLFHLFTQPNYEDPLNHEAAAVLRDNPKLFESNVRRAMAGGYV-GQTF 339
            G+Y GG F F+F V+P +PHE PKVKC  KVYHPNIDLEGNVCLNILREDWKPVL++N ++ GL +LF +PN  DPLN +AA  +  N + F+ NV+ +MAGG V G+ F
Sbjct:   64 GFYQGGEFRFSFYVNPNFPHEPPKVKCLQKVYHPNIDLEGNVCLNILREDWKPVLSLNAVMIGLQYLFLEPNASDPLNKDAAHQMTANREEFKRNVKHSMAGGSVAGERF 173          
The following BLAST results are available for this feature:
BLAST of EY728507 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
RCE1_ARATH5.477e-5991.23NEDD8-conjugating enzyme Ubc12 OS=Arabidopsis thal... [more]
UB12L_ARATH2.813e-5586.84Probable NEDD8-conjugating enzyme Ubc12-like OS=Ar... [more]
UBC12_XENTR8.488e-4470.18NEDD8-conjugating enzyme Ubc12 OS=Xenopus tropical... [more]
UBC12_XENLA8.488e-4470.18NEDD8-conjugating enzyme Ubc12 OS=Xenopus laevis G... [more]
UBC12_MOUSE4.213e-4369.30NEDD8-conjugating enzyme Ubc12 OS=Mus musculus GN=... [more]
UBC12_HUMAN4.213e-4369.30NEDD8-conjugating enzyme Ubc12 OS=Homo sapiens GN=... [more]
UBC12_BOVIN4.213e-4369.30NEDD8-conjugating enzyme Ubc12 OS=Bos taurus GN=UB... [more]
UBC12_DROME4.360e-4066.67NEDD8-conjugating enzyme Ubc12 OS=Drosophila melan... [more]
UBC12_SCHPO6.097e-3461.82NEDD8-conjugating enzyme ubc12 OS=Schizosaccharomy... [more]
UBC12_YARLI2.317e-3360.91NEDD8-conjugating enzyme UBC12 OS=Yarrowia lipolyt... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-G02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728507 ID=EY728507; Name=EY728507; organism=Citrus sinensis; type=EST; length=882bp
CCACGCGTCCGAGGATATTATGTAGGTGGTACATTTGTGTTTACTTTCCA
AGTATCTCCCATCTACCCTCATGAGGCACCAAAGGTCAAATGCAAGACAA
AGGTTTACCACCCCAATATCGACCTGGAGGGAAACGTCTGCCTCAACATT
TTAAGAGAAGACTGGAAACCGGTTCTGAATATAAACACCATCATTTATGG
ACTCTTCCATCTTTTCACGCAACCCAATTATGAGGATCCCCTCAATCATG
AAGCAGCAGCTGTTTTAAGGGATAACCCAAAACTGTTTGAATCCAATGTT
AGAAGAGCAATGGCTGGTGGATATGTGGGGCAAACCTTCTTCATTCGGTG
CATATAATTGCTTTTGCCTGGAAATGCATGTTGCTTTGAAGGTAAGGAGC
TGTAAATTTGGTCGCAGGGCTGCTTCAATTTCTAGTAATGTGTTGGGACA
AAAATCTAAAATCTGCAAGGGAGTCGAAGTTTGTTGCTGCTGTACTTTGT
TTGTGTTGTGAATTGGCTGAAACAAATATTCCTATTTCAGTGAATCGATG
GGTTGTGCAGCTGCACTTGAAATTATCAGGTATTATCTTGTTAGGGTGGC
AATGCTTGCTGCTAGTTTCTTACCTATACATCAATCTCTTAAAAAAGGGA
GACGGGGTCAGGTCGTTTATGGAGAAACTAAAAAAAGGAGAGAGGGCGGC
CGTGCAGCGAACGAGCGACNTGCCGTGCGGCGACGCATTCTCTCTGTAGG
TCGCTGAGTCGCGGCGGGCGTGTTGTAGGGAGGGGATGGGAACGCTGGGG
TGCCAGGGTACTCCTTATCAATGCCTGTGCGATGGGGGAAGAGGAGGGTC
NGCCGGGGGGTGCGGGGGGCGGGCGGGGGCGG
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