EY728496

Overview
NameEY728496
Unique NameEY728496
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728496 vs. ExPASy Swiss-Prot
Match: VPS35_DICDI (Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.119e-13
Identity = 42/128 (32.81%), Postives = 76/128 (59.38%), Query Frame = 1
Query:   16 IIQVFPDEYHLQTLEILLGAFPQLQPSVDIQTVLSRLMERLSNYAASSPKILTEFLPVKTFSQLNHALGKGIKTPGDMPILGTVTLYSSLLTFTLPVHPGRVEYADQVLGACVKKLSGEGELGDNRAT 399
            +IQVFPDE+HL TL+I+L    QLQ  VD++T+++ L++RL+N+A  +  ++ +   +K F    + + + I+   +M +   + L+ SLL  TL  +P   + A++VLG C   +  + +   N+ T
Sbjct:  269 LIQVFPDEFHLATLDIILQTCAQLQSGVDVKTIIASLIDRLANFATRNADLVPD--NIKIFDIFFNNVKEIIQARPNMELQDILGLHVSLLNLTLKCYPTNKDNANEVLGLCQSIIVNKAKEDINKPT 394          
BLAST of EY728496 vs. ExPASy Swiss-Prot
Match: VPS35_BOVIN (Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 4.722e-13
Identity = 48/144 (33.33%), Postives = 79/144 (54.86%), Query Frame = 1
Query:    7 VRCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIQTVLSRLMERLSNYA--ASSPKILTEFLPVKTFSQLNHALGKGIKTPGDMPILGTVTLYSSLLTFTLPVHPGRVEYADQVLGACVK---KLSGEGELGDNRATQRIVALFK 423
            + CIIQVFPDE+HLQTL   L A  +L  +V+++ ++  L++RL+ +A     P I T+   +K F   +  +   I++  DMP    V+L  SL+   +  +P RV+Y D+VL   V+   KL+ E     +  ++ +  L K
Sbjct:  263 MECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPTD---IKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLK 403          
BLAST of EY728496 vs. ExPASy Swiss-Prot
Match: VPS35_MOUSE (Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 8.054e-13
Identity = 48/144 (33.33%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    7 VRCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIQTVLSRLMERLSNYA--ASSPKILTEFLPVKTFSQLNHALGKGIKTPGDMPILGTVTLYSSLLTFTLPVHPGRVEYADQVLGACVK---KLSGEGELGDNRATQRIVALFK 423
            + CIIQVFPDE+HLQTL   L A  +L  +V+++ ++  L++RL+ +A     P I  E   +K F   +  +   I++  DMP    V+L  SL+   +  +P RV+Y D+VL   V+   KL+ E     +  ++ +  L K
Sbjct:  263 MECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPAE---IKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLK 403          
BLAST of EY728496 vs. ExPASy Swiss-Prot
Match: VPS35_HUMAN (Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 1.794e-12
Identity = 47/144 (32.64%), Postives = 78/144 (54.17%), Query Frame = 1
Query:    7 VRCIIQVFPDEYHLQTLEILLGAFPQLQPSVDIQTVLSRLMERLSNYA--ASSPKILTEFLPVKTFSQLNHALGKGIKTPGDMPILGTVTLYSSLLTFTLPVHPGRVEYADQVLGACVK---KLSGEGELGDNRATQRIVALFK 423
            + CIIQVFPDE+HLQTL   L A  +L  +V+++ ++  L++RL+ +A     P I  +   +K F   +  +   I++  DMP    V+L  SL+   +  +P RV+Y D+VL   V+   KL+ E     +  ++ +  L K
Sbjct:  263 MECIIQVFPDEFHLQTLNPFLRACAELHQNVNVKNIIIALIDRLALFAHREDGPGIPAD---IKLFDIFSQQVATVIQSRQDMPSEDVVSLQVSLINLAMKCYPDRVDYVDKVLETTVEIFNKLNLEHIATSSAVSKELTRLLK 403          
The following BLAST results are available for this feature:
BLAST of EY728496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
VPS35_DICDI2.119e-1332.81Vacuolar sorting protein 35 OS=Dictyostelium disco... [more]
VPS35_BOVIN4.722e-1333.33Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_MOUSE8.054e-1333.33Vacuolar protein sorting-associated protein 35 OS=... [more]
VPS35_HUMAN1.794e-1232.64Vacuolar protein sorting-associated protein 35 OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-F01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728496 ID=EY728496; Name=EY728496; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGCTGCATCATCCAAGTCTTTCCTGATGAGTACCATTTGCA
AACTCTTGAAATATTGTTGGGGGCTTTCCCACAGCTTCAACCATCTGTTG
ACATTCAGACAGTCCTATCTCGTTTGATGGAAAGACTTTCAAACTATGCT
GCTTCCAGCCCAAAAATTTTAACTGAATTCTTGCCAGTTAAAACTTTTTC
CCAGTTGAACCATGCCCTTGGGAAAGGGATAAAAACTCCAGGTGACATGC
CTATCCTTGGAACTGTGACCTTATATTCCTCTCTTCTTACGTTTACTCTC
CCTGTTCACCCCGGTCGGGTTGAATATGCCGATCAAGTGCTGGGAGCTTG
TGTTAAAAAACTTTCGGGCGAAGGAGAACTTGGAGACAACAGAGCCACAC
AGCGGATTGTTGCGCTCTTTAAGTGCTCCACTGGACAAATACAATGACAT
TGTGACTGTGCTATAACTTTTCCACTATCTCCCTGTGATGGAATACGTTG
ACAGTGAAACCAATAAAGTCATGGCGATGGTTATTATTCTCACGCTTATG
AGAAACATACTCAGATTTCGACCTGCTGACCAGGTGGAGGCATTGTTTGA
ATTAATTAAAGGGCGTATCACGGAGCTGNATGGGGGCGCTCATCATCCAG
GTGATGAAGATGATTCAGGAAGAGCAGAACTGTTGGTGGCCGGCTTTTCA
GATGCTTCGGGATGATGATACAGAGGGAATGTTTATATCTTATTTCCCGG
AGGGGACTATTTTTTCTGGGGGGCCCGACCCCGCCGCGTAGGGTCTCCCC
CTGCGGTTTCTTCTCTAAAGTGGGTCGGGGCCCCCCGGCCCGAAGGAGAC
TCCTTGGGGAGAAGGGGGGGTACCCTCGAAAGTATCCGGCGTTGACCGGC
ATT
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