EY728480

Overview
NameEY728480
Unique NameEY728480
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length930
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_NARPS (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Narcissus pseudonarcissus GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 146.747 bits (369), Expect = 1.723e-34
Identity = 85/142 (59.86%), Postives = 97/142 (68.31%), Query Frame = 2
Query:  281 MGSSVLFPATSVTGVSWSRVQE----KCRRFCVRASLDANVSHMSVNAPKGLFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            M SS     +S  GV   +V+     + + F +R++LD  VS MSVNAPKGLFPPEPEHYR PKLKVAIIGAGLAGMSTAVELLDQGH+VDIYESR FIGG+VGSFVD RG  I      F         + +KVGAD N L
Sbjct:    1 MASSTCLIHSSSFGVGGKKVKMNTMIRSKLFSIRSALDTKVSDMSVNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRQFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGADENLL 142          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_ARATH (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Arabidopsis thaliana GN=ZDS1 PE=2 SV=3)

HSP 1 Score: 145.591 bits (366), Expect = 3.839e-34
Identity = 86/138 (62.32%), Postives = 99/138 (71.74%), Query Frame = 2
Query:  281 MGSSVLFPATSVTGVSWSRVQEKCRRFCVRASLDANVSHMSVNAPKGLFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            M SSV+F AT     S S    K RRF V +SLD++VS MSVNAPKGLFPPEP  Y+ PKLKVAIIGAGLAGMSTAVELLDQGH+VDIY+SR+FIGG+VGSFVD RG  I      F         + +KVGA++N L
Sbjct:    1 MASSVVFAATG----SLSVPPLKSRRFYVNSSLDSDVSDMSVNAPKGLFPPEPVPYKGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYDSRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLL 134          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_TARER (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Tagetes erecta PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 3.250e-33
Identity = 84/151 (55.63%), Postives = 98/151 (64.90%), Query Frame = 2
Query:  287 SSVLFPATSVTGVSWS---------------RVQEKCRRFCVRASLDANVSHMSVNAPKGLFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            +S+ FPATS  G   S                 + K R+  VR+ LD +VS M  NAPKGLFPPEPEHYR PKLKVAIIGAGLAGMSTAVELLDQGH+VDIYESR+FIGG+VGSFVD +G  I      F         + +KVGA++N L
Sbjct:   10 TSLCFPATSAAGARTSFRTTDTFLRYRRSRQLTRLKVRKAVVRSDLDRDVSDMRTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKQGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLL 160          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_SOLLC (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Solanum lycopersicum GN=ZDS PE=2 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 5.544e-33
Identity = 77/114 (67.54%), Postives = 87/114 (76.32%), Query Frame = 2
Query:  353 RRFCVRASLDANVSHMSVNAPKGLFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            R+  +RA LD+ VS MS NAPKGLFPPEPEHYR PKLKVAIIGAGLAGMSTAVELLDQGH+VDIYESR+FIGG+VGSFVD RG  I      F         + +KVGA++N L
Sbjct:   44 RKSVIRADLDSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDRRGNHIEMGLHVFFGCYNNLFRLLKKVGAEKNLL 157          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_CAPAN (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Capsicum annuum GN=ZDS PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.693e-32
Identity = 75/110 (68.18%), Postives = 85/110 (77.27%), Query Frame = 2
Query:  365 VRASLDANVSHMSVNAPKGLFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            +RA L++ VS MS NAPKGLFPPEPEHYR PKLKVAIIGAGLAGMSTAVELLDQGH+VDIYESR+FIGG+VGSFVD RG  I      F         + +KVGA++N L
Sbjct:   48 IRADLNSMVSDMSTNAPKGLFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDIYESRTFIGGKVGSFVDKRGNHIEMGLHVFFGCYNNLFRLMKKVGAEKNLL 157          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_MAIZE (Zeta-carotene desaturase, chloroplastic/chromoplastic OS=Zea mays GN=ZDS1 PE=2 SV=1)

HSP 1 Score: 112.849 bits (281), Expect = 2.758e-24
Identity = 62/91 (68.13%), Postives = 68/91 (74.73%), Query Frame = 2
Query:  422 LFPPEPEHYR*PKLKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD*RGG-IWKWACAFSWDGRESVPIDEKVGADRNYL 691
            LFPPEPEHYR PKLKVAIIGAGLAGMSTAVELLDQGH+VD+YESR FIGG+VGSFVD +G  I      F         + +KVGAD N L
Sbjct:   52 LFPPEPEHYRGPKLKVAIIGAGLAGMSTAVELLDQGHEVDLYESRPFIGGKVGSFVDRQGNHIEMGLHVFFGCYSNLFRLMKKVGADNNLL 142          
BLAST of EY728480 vs. ExPASy Swiss-Prot
Match: ZDS_SYNY3 (Zeta-carotene desaturase OS=Synechocystis sp. (strain PCC 6803) GN=crtQ PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.054e-16
Identity = 32/44 (72.73%), Postives = 43/44 (97.73%), Query Frame = 2
Query:  461 LKVAIIGAGLAGMSTAVELLDQGHQVDIYESRSFIGGRVGSFVD 592
            ++VAI+GAGLAGM+TAVEL+D GH+V++YE+RSFIGG+VGS+VD
Sbjct:    1 MRVAIVGAGLAGMATAVELVDAGHEVELYEARSFIGGKVGSWVD 44          

HSP 2 Score: 29.6462 bits (65), Expect = 6.054e-16
Identity = 19/62 (30.65%), Postives = 29/62 (46.77%), Query Frame = 3
Query:  627 FLGMVGNLFRLMKKSG-RTEITCEGSDSSLLNPGG*DG*TEVRVPIASPRRGIRALLWPSSL 809
            F G   NLF LM+K G +  +  +    + +N GG  G  + R    +P  G++A    S L
Sbjct:   57 FFGCYYNLFNLMEKVGAKQNLRLKEHTHTFVNQGGRIGELDFRFLTGAPFNGLKAFFTTSQL 118          

HSP 3 Score: 21.9422 bits (45), Expect = 6.054e-16
Identity = 8/11 (72.73%), Postives = 9/11 (81.82%), Query Frame = 1
Query:  604 HMEMGLRVFLG 636
            H+EMGL VF G
Sbjct:   49 HIEMGLHVFFG 59          
The following BLAST results are available for this feature:
BLAST of EY728480 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
ZDS_NARPS1.723e-3459.86Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_ARATH3.839e-3462.32Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_TARER3.250e-3355.63Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SOLLC5.544e-3367.54Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_CAPAN4.693e-3268.18Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_MAIZE2.758e-2468.13Zeta-carotene desaturase, chloroplastic/chromoplas... [more]
ZDS_SYNY36.054e-1672.73Zeta-carotene desaturase OS=Synechocystis sp. (str... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-D01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728480 ID=EY728480; Name=EY728480; organism=Citrus sinensis; type=EST; length=930bp
CCACGCGTCCGAAACAAAGAAGTACTTTGCCATTTGCCAACCTCTCTAAA
ACAGTTCAGTTCCCTGACAAAACTCTCTTCCTTAGCATCTTGTTAGATTC
TGATACTCAAAGATACCCTTTTGTATTATTTTAGTTTCTTAATTAAATTT
TGTTGATGTCGACGAATCTTTGTTGATATCAAAGAAAAATACTTTGTTAT
CGAAACAAAAGAGAGCAGAGCTGGGCTGAGCTGAATTGAGTTCCGATTGA
ATTTCTTGATTTCAGCTCGGGATTTTCAATATGGGTTCTTCAGTTCTGTT
TCCTGCAACTTCAGTCACTGGTGTTAGTTGGTCTCGGGTTCAAGAGAAGT
GTCGAAGATTCTGTGTACGGGCTTCTTTGGACGCTAATGTTTCTCATATG
AGTGTTAATGCACCCAAGGGTTTGTTTCCTCCAGAACCAGAACATTATAG
ATGACCAAAGCTGAAAGTGGCTATTATTGGAGCTGGGCTTGCGGGCATGT
CAACGGCAGTGGAATTGTTGGATCAAGGCCACCAGGTGGATATATATGAG
TCACGGTCTTTTATTGGTGGTAGAGTGGGTTCGTTTGTCGATTAACGTGG
AGGCATATGGAAATGGGCCTGCGCGTTTTCTTGGGATGGTAGGGAATCTG
TTCCGATTGATGAAAAAGTCGGGGCGGACAGAAATTACTTGTGAGGGATC
GGACTCCTCCCTTTTGAATCCGGGTGGGTGAGATGGTTGAACTGAAGTCC
GGGTCCCAATTGCGAGCCCGCGCCGTGGGATTCGCGCGTTGCTGTGGCCA
AGCAGCTTGGGGCTTTGTATAAGGCATAAAAGCGTGGTGGCCTGTGTCGG
GGGCCCGGTGGTAGGGGGTGTGGTGCTCCGGGAGGGCCCTTATGCGGATG
CGGCGTGGGCGCGTGGAGGCGTGCGTGAGG
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