EY728471

Overview
NameEY728471
Unique NameEY728471
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length860
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 4.183e-24
Identity = 59/139 (42.45%), Postives = 82/139 (58.99%), Query Frame = 3
Query:   66 ETSQQSEQ-----HGIFSGAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPFFVPETGEDRGEHGD 467
            ETSQ+ +      +G FSG ++  +K+AC  A+  K  RL+  MY C++    D L ++Y V+S R  RVL+EEM EG+ +F   A LPV+ES GFADE+RK T           HWE +P DPF+VP T E+    G+
Sbjct:  948 ETSQKGDSPVIDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGE 1086          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 7.135e-24
Identity = 59/141 (41.84%), Postives = 82/141 (58.16%), Query Frame = 3
Query:   60 DSETSQQSEQ-----HGIFSGAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPFFVPETGEDRGEHGD 467
            +  TSQ+ E      +G FSG ++  +K+AC  A+  K  RL+  MY C++    D L ++Y V+S R  RVL+EEM EG+ +F   A LPV+ES GFADE+RK T           HWE +P DPF+VP T E+    G+
Sbjct:  939 EKRTSQKGESPLTDCYGPFSGQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGE 1079          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 1.303e-17
Identity = 47/138 (34.06%), Postives = 79/138 (57.25%), Query Frame = 3
Query:   57 VDSETSQQSEQHGI-FSGAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPFFVPETGEDRGEHGD 467
            ++S    + +QH +  SG ++T+ +DA  +A L   PR++  +Y C++ T VD L K+Y V+  R  +++ EEM EG+  F   A++PV E+ G ++++RK T            +E +  DPF+VP T E+  E GD
Sbjct:  933 IESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGD 1070          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.441e-16
Identity = 48/121 (39.67%), Postives = 68/121 (56.20%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPFFVPETGEDRGEHGD 467
            G V++ VK++     L   PRL+  MY C++    + L ++YGVVS RR RV+ EEM EG+  F   A +PV ES GFA E+ K T            +E L E+PF+VP T E+  + G+
Sbjct:  841 GQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGE 961          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_DROME (Elongation factor 2 OS=Drosophila melanogaster GN=Ef2b PE=1 SV=4)

HSP 1 Score: 81.2629 bits (199), Expect = 7.907e-15
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G ++   +     A +  KPRL+E +Y CE+  P  ++  +YGV++ RR  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DP
Sbjct:  705 GQIIPTTRRCLYAAAITAKPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEENQVVGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 810          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_BOMMO (Translation elongation factor 2 OS=Bombyx mori GN=tef2 PE=1 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 3.005e-14
Identity = 37/106 (34.91%), Postives = 57/106 (53.77%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDP 422
            G ++   +      +L  +PRL+E +Y CE+  P  ++  +YGV++ RR  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DP
Sbjct:  705 GQIIPTTRRCLYACLLTAQPRLMEPVYLCEIQCPEVAVGGIYGVLNRRRGHVFEESQVAGTPMFIVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQVLPGDP 810          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_RAT (Elongation factor 2 OS=Rattus norvegicus GN=Eef2 PE=1 SV=4)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPF 425
            G ++   +     +VL  +PRL+E +Y  E+  P   +  +YGV++ +R  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DPF
Sbjct:  719 GQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF 825          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_PONAB (Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPF 425
            G ++   +     +VL  +PRL+E +Y  E+  P   +  +YGV++ +R  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DPF
Sbjct:  719 GQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF 825          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_MOUSE (Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 SV=2)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPF 425
            G ++   +     +VL  +PRL+E +Y  E+  P   +  +YGV++ +R  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DPF
Sbjct:  719 GQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF 825          
BLAST of EY728471 vs. ExPASy Swiss-Prot
Match: EF2_MESAU (Elongation factor 2 OS=Mesocricetus auratus GN=EEF2 PE=2 SV=3)

HSP 1 Score: 78.1814 bits (191), Expect = 6.694e-14
Identity = 37/107 (34.58%), Postives = 57/107 (53.27%), Query Frame = 3
Query:  105 GAVMTAVKDACIQAVLKKKPRLVETMYFCELNTPVDSLSKMYGVVSPRRARVLKEEMLEGSALFTGHAYLPVSESIGFADELRKETXXXXXXXXXXXHWEELPEDPF 425
            G ++   +     +VL  +PRL+E +Y  E+  P   +  +YGV++ +R  V +E  + G+ +F   AYLPV+ES GF  +LR  T           HW+ LP DPF
Sbjct:  719 GQIIPTARRCLYASVLTAQPRLMEPIYLVEIQCPEQVVGGIYGVLNRKRGHVFEESQVAGTPMFVVKAYLPVNESFGFTADLRSNTGGQAFPQCVFDHWQILPGDPF 825          
The following BLAST results are available for this feature:
BLAST of EY728471 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 35
Match NameE-valueIdentityDescription
ETUD1_MOUSE4.183e-2442.45Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN7.135e-2441.84Elongation factor Tu GTP-binding domain-containing... [more]
RIA1_YEAST1.303e-1734.06Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
RIA1_SCHPO1.441e-1639.67Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
EF2_DROME7.907e-1535.85Elongation factor 2 OS=Drosophila melanogaster GN=... [more]
EF2_BOMMO3.005e-1434.91Translation elongation factor 2 OS=Bombyx mori GN=... [more]
EF2_RAT6.694e-1434.58Elongation factor 2 OS=Rattus norvegicus GN=Eef2 P... [more]
EF2_PONAB6.694e-1434.58Elongation factor 2 OS=Pongo abelii GN=EEF2 PE=2 S... [more]
EF2_MOUSE6.694e-1434.58Elongation factor 2 OS=Mus musculus GN=Eef2 PE=1 S... [more]
EF2_MESAU6.694e-1434.58Elongation factor 2 OS=Mesocricetus auratus GN=EEF... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-C01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728471 ID=EY728471; Name=EY728471; organism=Citrus sinensis; type=EST; length=860bp
CACGCGTCCGGGCTTTTATTGTTGAGGCTTACATCTCTCCTGTGGCTGGG
AAATATGTTGACTCTGAAACTTCCCAACAATCTGAGCAGCATGGCATCTT
CTCTGGGGCAGTTATGACAGCTGTTAAAGATGCATGTATACAAGCTGTGC
TCAAAAAGAAACCCCGACTTGTTGAAACCATGTATTTTTGTGAGTTGAAC
ACACCGGTTGATTCTTTGAGTAAAATGTATGGAGTGGTTTCCCCAAGGCG
GGCTCGGGTGCTGAAGGAGGAAATGCTGGAAGGTTCTGCACTTTTCACGG
GGCATGCTTATTTGCCTGTTTCTGAAAGTATTGGTTTTGCTGATGAGCTT
AGGAAAGAAACCTCTGGTGCTGCAAGTGCTCTTCTTGCCCTTAGCCACTG
GGAAGAACTTCCTGAGGATCCTTTCTTTGTACCCGAAACAGGGGAGGACA
GAGGAGAGCATGGAGATGGGTTCTAGTGTGCTGTCGCATACGGCGGGAGA
ACGCCTGGATGCTGTGAGGGACCGAGCGGCTTACGTGTCGGGCCATCGGT
ATGGAGCAGGGACCTACGCACAGGACGCTGGCGCGCAGACTCTGAAAGGT
GGGTGAACGGGGAGTGTGCATCGGCGTCTAACCGAAGAGCGTAAAACAGC
ATAGGTCACCCCGTCACTGCCTCAAACAGTGGGCGCCTAGCGGCGCGGCC
GGAACTGACGTATTGCTATGGCATGGAGAATCCTTGTGAGGGGGGGGTCC
GCGCCGCGCAGGCACAGAAGGGGAGCGGGTGTCTGGGCGAGCGGCGGACG
TGTCGGCGCCGCGCGCCTAGGCTCGCGCCGGCCTGGTGGAGGGGCGACGG
CGTGGCAACG
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