EY728467
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Alignments
Homology
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2) HSP 1 Score: 219.935 bits (559), Expect = 1.346e-56 Identity = 118/209 (56.46%), Postives = 144/209 (68.90%), Query Frame = 1 Query: 70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681 R KRPRSN+ PSSPDSS+LTREG++K N+DP A+G SRVLQGQE+STLR E S E D E SVVW S DD+K+DVVS SRRYGSENW+ RHEP YTDLLSGFG N DPSHG PF D ++P ++ + D EGKF+ +A W ++ SG SLK+ ES KVP D + Q R NV+Y +YP+LNG E++ GNW Sbjct: 408 RPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNW 609
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1) HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19 Identity = 71/211 (33.65%), Postives = 109/211 (51.66%), Query Frame = 1 Query: 70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681 R KRPR N P+SP+S +LT+E ++K++ DP+ A + S VLQGQE TLR N ESN+SD TA K ++W PS + K ++ +R +NW+ GR E + D+ SG + D S GF D P R K+ +G + P+ + PSL + ES+ ++ ++++ + YG D P R E + +W Sbjct: 371 RVKRPRPNAPPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLT--ESNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSW 575
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 7.473e-15 Identity = 63/214 (29.44%), Postives = 98/214 (45.79%), Query Frame = 1 Query: 70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKS---------VLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVRYGGFGDYPMLNGNRVEHSHGNW 681 R+KR R N+L SSPD S + +E +SK+ + S G R QE LR F + SNE +T++K +W + EK + VS R GS++W+ R + +++LSGF D + SS F + +S DQ N+ WSLMP + + N + D+ R N ++GG G + L + ++ W Sbjct: 392 RTKRARPNVLASSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEK-NNVSVQRELGSQSWMQMRRPDG-SSEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGW 596
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1) HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13 Identity = 64/214 (29.91%), Postives = 95/214 (44.39%), Query Frame = 1 Query: 70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681 R+KR R N DSS + +E ++K+ V+ S G R Q QE +T + F S+E ++A+KS++ P D EK + + GS+ W+ + E Y+++LSGF D GF S V DQ+ N+ WS MP L + + N + +Q V Q GN ++G G Y L G E G W Sbjct: 393 RTKRLRPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12 Identity = 63/214 (29.44%), Postives = 94/214 (43.93%), Query Frame = 1 Query: 70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681 R+KR R N DSS + +E ++K+ V+ S G R Q QE +T + F S+E ++A+KS++ P D EK + + GS+ + + E Y+++LSGF D GF S V DQ+ N+ WS MP L + + N + +Q V Q GN ++G G Y L G E G W Sbjct: 393 RTKRLRPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGRMQMSKPES-YSEMLSGFQPPKDVQIPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599 The following BLAST results are available for this feature:
BLAST of EY728467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 5
Properties
Sequences
The
following sequences are available for this feature:
EST sequence >EY728467 ID=EY728467; Name=EY728467; organism=Citrus sinensis; type=EST; length=827bpback to top |