EY728467

Overview
NameEY728467
Unique NameEY728467
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length827
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11749 contig Csv1_Contig11749:1..828. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFB_ARATH (Auxin response factor 2 OS=Arabidopsis thaliana GN=ARF2 PE=1 SV=2)

HSP 1 Score: 219.935 bits (559), Expect = 1.346e-56
Identity = 118/209 (56.46%), Postives = 144/209 (68.90%), Query Frame = 1
Query:   70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFAD-----AVPVRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681
            R KRPRSN+ PSSPDSS+LTREG++K N+DP  A+G SRVLQGQE+STLR    E  S E D  E SVVW  S DD+K+DVVS SRRYGSENW+   RHEP YTDLLSGFG N DPSHG   PF D     ++P ++ + D EGKF+ +A  W ++ SG SLK+ ES  KVP    D + Q R NV+Y    +YP+LNG   E++ GNW
Sbjct:  408 RPKRPRSNIAPSSPDSSMLTREGTTKANMDPLPASGLSRVLQGQEYSTLRTKHTE--SVECDAPENSVVWQSSADDDKVDVVSGSRRYGSENWMSSARHEPTYTDLLSGFGTNIDPSHGQRIPFYDHSSSPSMPAKRILSDSEGKFDYLANQWQMIHSGLSLKLHES-PKVPA-ATDASLQGRCNVKY---SEYPVLNGLSTENAGGNW 609          
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFD_ORYSJ (Auxin response factor 4 OS=Oryza sativa subsp. japonica GN=ARF4 PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 2.245e-19
Identity = 71/211 (33.65%), Postives = 109/211 (51.66%), Query Frame = 1
Query:   70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSA--TGFSRVLQGQEFSTLRGNFAERESNESD-TAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVR----KSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681
            R KRPR N  P+SP+S +LT+E ++K++ DP+ A  +  S VLQGQE  TLR N    ESN+SD TA K ++W PS +  K   ++  +R   +NW+  GR E  + D+ SG  +  D S GF     D  P R    K+    +G     + P+  +   PSL + ES+ ++     ++++    +  YG   D P     R E +  +W
Sbjct:  371 RVKRPRPNAPPASPESPILTKEAATKVDTDPAQAQRSQNSTVLQGQEQMTLRSNLT--ESNDSDVTAHKPMMWSPSPNAAKAHPLTFQQRPPMDNWMQLGRRETDFKDVRSGSQSFGD-SPGFFMQNFDEAPNRLTSFKNQFQDQGSARHFSDPYYYVSPQPSLTV-ESSTQMHTDSKELHFWNGQSTVYGNSRDRP--QNFRFEQNSSSW 575          
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFX_ORYSJ (Auxin response factor 24 OS=Oryza sativa subsp. japonica GN=ARF24 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 7.473e-15
Identity = 63/214 (29.44%), Postives = 98/214 (45.79%), Query Frame = 1
Query:   70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPSHGFSSPFADAVPVRKS---------VLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRG-NVRYGGFGDYPMLNGNRVEHSHGNW 681
            R+KR R N+L SSPD S + +E +SK+  + S   G  R    QE   LR  F +  SNE +T++K  +W    + EK + VS  R  GS++W+   R +   +++LSGF    D  +  SS F   +   +S           DQ    N+    WSLMP      + + N    +   D+    R  N ++GG G +  L  + ++     W
Sbjct:  392 RTKRARPNVLASSPDLSAVNKEVASKVMAN-SQQNGLPRAFHSQENMNLRSRFGD--SNELNTSQKLTMWSSGSNQEK-NNVSVQRELGSQSWMQMRRPDG-SSEILSGFQPLKDTRNPLSS-FPSQISGNRSNTWNTINVHYPDQNANHNMYPGTWSLMPPNTGFGVNQQNY---LMTPDITLPQRSLNAKFGGNGAFTSLRAHGIDQRSSGW 596          
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSI (Auxin response factor 23 OS=Oryza sativa subsp. indica GN=ARF23 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.841e-13
Identity = 64/214 (29.91%), Postives = 95/214 (44.39%), Query Frame = 1
Query:   70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681
            R+KR R N      DSS + +E ++K+ V+ S   G  R  Q QE +T +  F    S+E ++A+KS++ P   D EK +      + GS+ W+   + E  Y+++LSGF    D     GF S               V     DQ+   N+    WS MP    L + + N  + +Q   V  Q  GN ++G  G Y  L G   E   G W
Sbjct:  393 RTKRLRPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGWMQMSKPES-YSEMLSGFQPPKDVQTPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599          
BLAST of EY728467 vs. ExPASy Swiss-Prot
Match: ARFW_ORYSJ (Auxin response factor 23 OS=Oryza sativa subsp. japonica GN=ARF23 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 7.734e-12
Identity = 63/214 (29.44%), Postives = 94/214 (43.93%), Query Frame = 1
Query:   70 RSKRPRSNMLPSSPDSSVLTREGSSKLNVDPSSATGFSRVLQGQEFSTLRGNFAERESNESDTAEKSVVWPPSLDDEKIDVVSASRRYGSENWVPPGRHEPVYTDLLSGFGANADPS--HGFSSPFADAVP--------VRKSVLDQEGKFNLVARPWSLMPSGPSLKMPESNAKVPVQGGDVNYQVRGNVRYGGFGDYPMLNGNRVEHSHGNW 681
            R+KR R N      DSS + +E ++K+ V+ S   G  R  Q QE +T +  F    S+E ++A+KS++ P   D EK +      + GS+  +   + E  Y+++LSGF    D     GF S               V     DQ+   N+    WS MP    L + + N  + +Q   V  Q  GN ++G  G Y  L G   E   G W
Sbjct:  393 RTKRLRPNATALPADSSAIAKEAATKVVVE-SEPNGTQRTFQTQENATPKSGFGN--SSELESAQKSIMRPSGFDREKNNT-PIQWKLGSDGRMQMSKPES-YSEMLSGFQPPKDVQIPQGFCSLPEQITAGHSNFWHTVNAQYQDQQSNHNMFPSSWSFMPPNTRLGLNKQNYSM-IQEAGVLSQRPGNTKFGN-GVYAALPGRGTEQYSGGW 599          
The following BLAST results are available for this feature:
BLAST of EY728467 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
ARFB_ARATH1.346e-5656.46Auxin response factor 2 OS=Arabidopsis thaliana GN... [more]
ARFD_ORYSJ2.245e-1933.65Auxin response factor 4 OS=Oryza sativa subsp. jap... [more]
ARFX_ORYSJ7.473e-1529.44Auxin response factor 24 OS=Oryza sativa subsp. ja... [more]
ARFW_ORYSI1.841e-1329.91Auxin response factor 23 OS=Oryza sativa subsp. in... [more]
ARFW_ORYSJ7.734e-1229.44Auxin response factor 23 OS=Oryza sativa subsp. ja... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-B07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728467 ID=EY728467; Name=EY728467; organism=Citrus sinensis; type=EST; length=827bp
CCACGCGTCCGCGGACGCGTGGGAGAACCTGCATTGGCTCCTCCAGCACT
TAATTCTCTTCCGATGCCTAGGTCCAAAAGGCCCAGATCAAACATGTTGC
CCTCATCACCTGACTCGTCTGTTCTCACTAGGGAAGGTTCATCTAAACTA
AATGTAGACCCTTCATCAGCTACTGGATTTTCAAGGGTCTTGCAAGGTCA
AGAATTCTCGACCTTGAGAGGCAATTTTGCAGAGAGAGAAAGTAACGAGT
CTGACACTGCTGAAAAGTCTGTTGTGTGGCCACCTTCACTTGATGATGAG
AAGATTGATGTGGTGTCTGCTTCAAGAAGATATGGATCAGAGAACTGGGT
GCCACCAGGGAGGCATGAACCAGTGTACACTGATTTGCTGTCAGGATTTG
GAGCAAATGCTGATCCCTCCCATGGGTTTAGTTCACCTTTTGCTGATGCA
GTTCCAGTAAGAAAAAGTGTACTGGATCAAGAGGGGAAGTTTAACTTGGT
TGCTCGACCATGGTCCTTGATGCCCTCTGGTCCATCACTTAAAATGCCAG
AGTCTAATGCAAAAGTTCCGGTACAAGGTGGTGATGTAAATTATCAAGTG
CGTGGTAATGTTAGATATGGCGGGTTTGGTGACTATCCCATGCTTAACGG
CAATAGAGTTGAGCACTCACATGGAAACTGGTTAATGCCCCCCTTCCCCC
TTCTAATTTTGAAAATTCANCTCATTCGAGAGAGTNGATGCCANATCAGC
AATGGTTGCAGACCAGAAGCTGGAAAACTAAGGACTGGAAGCTTNTGGGC
ATTCCCCTCTCAGTACCATGTGATGCC
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