EY728462

Overview
NameEY728462
Unique NameEY728462
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length872
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of EY728462 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 8.336e-28
Identity = 64/121 (52.89%), Postives = 78/121 (64.46%), Query Frame = 3 
Query:   57 MLEKLWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETXSKHH 419
            +L+KLWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGET SKHH
Sbjct:    3 LLDKLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110
The following BLAST results are available for this feature:
BLAST of EY728462 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN8.336e-2852.89Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-A11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728462 ID=EY728462; Name=EY728462; organism=Citrus sinensis; type=EST; length=872bp
CCACGCGTCCGGAGGTTAAAGATTTAGAAACTAGCAGCTAAATTGTAAAT
TTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCC
TGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAG
TCAAAGAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCT
CTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGAC
GACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACC
CCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAG
CCCACACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGA
GACTANGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTA
AATGAATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGT
AGATAGTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGT
TAATGCTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAA
TGCTGCTGACTAANAGTAAACTAAAGACTGTGATGTTTTTATATCATATA
ATTTAATAATTGTATGTGATGTGAGGATTGCTAAGCTGTGGGCGGAGATG
AAAGGTTGCTGGTTTGGGGTTAGGAATGTTTTGATGTCATTTGTAGAAGC
AGATCACCCTCTGGACGTCGGAGACATTTGTTAATATTAAAATAATGCTC
CTGAAAAAGAAAAAAAAAAAAAAAAAAAAGGGGGCCCAAGATAGTAGTCC
TGGGAGTAACCTTAGTCCAATA
back to top