EY728461

Overview
NameEY728461
Unique NameEY728461
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length887
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11747 contig Csv1_Contig11747:1..890. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY728461 vs. ExPASy Swiss-Prot
Match: SRF8_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsis thaliana GN=SRF8 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.765e-18
Identity = 54/107 (50.47%), Postives = 63/107 (58.88%), Query Frame = 1 
Query:  115 DLSFNNFSGDLPXXXXXXXXXXXXXVKFSFLSRGKVAAIFLNFYVSANDL*ICGSYLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRELISIRTFIYDGNSFDN 435
            DLS NNFSGDLP                S LS     ++                Y+QNNQ+TGS++V SGLPL TLNVANNHF+G IP+EL SI+T IYDGNSFDN
Sbjct:  173 DLSHNNFSGDLP----------------SSLSTVSTLSVL---------------YVQNNQLTGSIDVLSGLPLKTLNVANNHFNGSIPKELSSIQTLIYDGNSFDN 248
[Close]
BLAST of EY728461 vs. ExPASy Swiss-Prot
Match: SRF6_ARATH (Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana GN=SRF6 PE=1 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 2.507e-11
Identity = 33/53 (62.26%), Postives = 41/53 (77.36%), Query Frame = 1 
Query:  280 YLQNNQVTGSLNVFSGLPLTTLNVANNHFSGWIPRELISIRTFIYDGNSFDNG 438
            YLQNNQ +G+++V +GLPL TLN+ANN F+GWIP  L  I T I DGNSF+ G
Sbjct:  196 YLQNNQFSGTVDVLAGLPLETLNIANNDFTGWIPSSLKGI-TLIKDGNSFNTG 247
The following BLAST results are available for this feature:
BLAST of EY728461 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
SRF8_ARATH2.765e-1850.47Protein STRUBBELIG-RECEPTOR FAMILY 8 OS=Arabidopsi... [more]
SRF6_ARATH2.507e-1162.26Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-004-A09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728461 ID=EY728461; Name=EY728461; organism=Citrus sinensis; type=EST; length=887bp
CCACGCGTCCGTGCAATTTTTTTTTTAATAAATTGCACCTGTTGGTTTTT
TCTTGCATTTAACACTTTTCCTAAATGCATTGCACACTTTTTTTATCTTG
CTTCATGATGTAGGGACCTCTCTTTCAACAATTTTTCTGGAGATCTTCCG
AATTCATTTATTTCATTGTCCAATATTTCTTCGCTGTGAGTAAAGTTCTC
CTTTCTTTCAAGGGGAAAAGTGGCTGCAATATTTTTGAATTTCTACGTGA
GTGCTAATGATCTCTAAATTTGTGGCAGCTATCTGCAGAACAATCAAGTG
ACTGGTTCTCTTAATGTCTTTTCGGGCTTGCCTTTGACTACTCTAAATGT
GGCAAACAATCATTTCAGTGGTTGGATACCTCGGGAACTCATTTCAATCC
GGACATTTATATATGACGGAAATTCTTTTGACAATGGTCCTGCTCCACCA
CCTCCGCCATCTACTGCACCTCCCTCTGGTAGATCTCACAATAATCGAAG
TCATCGACAAGGCTCACATTCACCTTCAGGCAGCCAGTCATCCAGTTCAG
ACAAGGAATTGCCAGCTGGAGCTATTGTCGGCATAGTTCTGGGTGCTGTG
TTTTTGGTTGCGCTGGCGCTACTTGCCCTTTATTTTTGCATTCGGAAGAA
TAGAAGAAAAGTAAGTGGTGNCAGGAGTTCTGCGGGAAGTTCCCTGTCAG
CACAAATACATGAATACCGAGATGCATGAGCAGCGGGTTANAAGTGTAGC
CGCTGTCACTGATCTGACACCTCCACTGCTGAAAAGTTGGTGATTGAGAG
GGTGGCAAAAGTGGATCCCTTAAGAAAATAAGTCACTATAACTGCTACTC
ATATACCGTNGCTCTCTCCAACAGCTACAATAACTTA
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