EY728454

Overview
NameEY728454
Unique NameEY728454
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length903
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11746 contig Csv1_Contig11746:1..904. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728454 vs. ExPASy Swiss-Prot
Match: 21KD_DAUCA (21 kDa protein OS=Daucus carota PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 2.252e-15
Identity = 40/131 (30.53%), Postives = 78/131 (59.54%), Query Frame = 3
Query:  399 NNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRLS---AREFDRQMDDLTXFVSAALTYEDTCLDGFEGQ 782
            N F++ +C++TTY  +C  SL+ ++K+ +N+P + A   + V++   +    F+ +L +   ++ R   A+ DC+E  ++++D +  S   ++ LS     +F  +M ++  +VSAALT E TC+DGF G+
Sbjct:   26 NQFIKTSCTLTTYPAVCEQSLSAYAKTIQNNPQELASTALQVSLTRTQQAQTFMKRLNKFKGLKARQYAAIHDCLEEVEDSLDRVSRSCDEMKNLSHAKGNDFTFRMSNVETWVSAALTDETTCMDGFAGK 156          
BLAST of EY728454 vs. ExPASy Swiss-Prot
Match: PME3_CITSI (Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  372 SGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARN--SPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTXFVSAALTYEDTCLDGF 773
            SG++ +   +  ++ +CS T Y DLC  ++A   ++++   S        +++T   V++    + KL +R  +  R ++AL DC+E   ET+DELH ++  L    + +   +  DDL   +SAA+T + TCLDGF
Sbjct:   57 SGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of EY728454 vs. ExPASy Swiss-Prot
Match: PME1_CITSI (Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE=2 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 1.046e-12
Identity = 42/137 (30.66%), Postives = 75/137 (54.74%), Query Frame = 3
Query:  372 SGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARN--SPGKWARAGVSVTIGEVKNVTQFLYKLKRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRL-SAREFDRQMDDLTXFVSAALTYEDTCLDGF 773
            SG++ +   +  ++ +CS T Y DLC  ++A   ++++   S        +++T   V++    + KL +R  +  R ++AL DC+E   ET+DELH ++  L    + +   +  DDL   +SAA+T + TCLDGF
Sbjct:   57 SGDNGNEPHHAILKSSCSSTRYPDLCFSAIAAVPEASKKVTSQKDVIEMSLNITTTAVEHNYFGIQKLLKRTNLTKREKVALHDCLETIDETLDELHKAVEDLEEYPNKKSLSQHADDLKTLMSAAMTNQGTCLDGF 193          
BLAST of EY728454 vs. ExPASy Swiss-Prot
Match: PME3_ARATH (Pectinesterase/pectinesterase inhibitor 3 OS=Arabidopsis thaliana GN=PME3 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 4.395e-11
Identity = 45/138 (32.61%), Postives = 73/138 (52.90%), Query Frame = 3
Query:  366 AKSGESASGNRNNFVRDACSVTTYRDLCIHSLAPFSKSARNSPGKWARAGVSVTIGEVKNVTQFLYKL-KRRNLMRGRNRLALLDCIECFQETIDELHMSLGILRRLSAREFDRQ-MDDLTXFVSAALTYEDTCLDGF 773
            A    + S + +  +R +CS T Y +LCI ++         S      A V++TI  V++    + KL K+R  +  R + AL DC+E   ET+DELH ++  L     ++  R+   DL   +S+A+T ++TCLDGF
Sbjct:   45 ANEKRTLSPSSHAVLRSSCSSTRYPELCISAVVTAGGVELTSQKDVIEASVNLTITAVEHNYFTVKKLIKKRKGLTPREKTALHDCLETIDETLDELHETVEDLHLYPTKKTLREHAGDLKTLISSAITNQETCLDGF 182          
The following BLAST results are available for this feature:
BLAST of EY728454 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 4
Match NameE-valueIdentityDescription
21KD_DAUCA2.252e-1530.5321 kDa protein OS=Daucus carota PE=2 SV=1[more]
PME3_CITSI1.046e-1230.66Pectinesterase 3 OS=Citrus sinensis PE=1 SV=1[more]
PME1_CITSI1.046e-1230.66Pectinesterase 1 OS=Citrus sinensis GN=PECS-1.1 PE... [more]
PME3_ARATH4.395e-1132.61Pectinesterase/pectinesterase inhibitor 3 OS=Arabi... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-H07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728454 ID=EY728454; Name=EY728454; organism=Citrus sinensis; type=EST; length=903bp
CCACGCGTCCGCAGCATCATCAGTCAATATTTAGCAAACAGATCTTCCCT
CTCAGGATCTATATCATCACCCTCATCCCAAATTTCATGAGAAACTCACC
AGTCCATTCACATGCTCTTTCACTTTCTTAATCAGCCTGTTCTACCCTTT
CCCCTTCTTTATTACACTCACCAGCCTCTTGCCTTGGTAACAACTAGAAA
AGCGCCCAAAAACTTCTTATAAAGTTTCCCATCAAAAAGCTTCTGTTAAT
TCAGGCTTCACATTTGATAGATATGATTTCTTTTTTTCACCCATTTTAAA
TCCTAGAAATAAAAGAAATGGCAGGACCAAACATGTTCATGTTGTTCATG
CTCCTTGCCTGGCTAGCAAAATCTGGCGAATCGGCATCCGGGAATAGGAA
TAACTTCGTCCGAGATGCATGTAGTGTGACAACATATCGAGATCTTTGTA
TCCACTCGCTAGCACCATTTTCTAAGAGTGCTAGGAATAGTCCTGGGAAG
TGGGCGCGTGCTGGCGTCTCGGTGACAATAGGTGAGGTCAAGAACGTAAC
TCAATTCTTGTACAAATTGAAGAGAAGAAACTTAATGAGAGGGAGAAATC
GATTGGCTCTTTTAGATTGCATCGAGTGCTTTCAAGAAACCATTGATGAA
CTTCACATGTCGCTTGGCATACTGAGGAGGCTAAGTGCAAGAGAGTTTGA
TAGACAAATGGATGATCTCACAANCTTTGTGAGCGCTGCACTGACTTATG
AAGACACTTGCTTGGATGGTTTTGAAGGGCAAAGGCAACGCAAGTAGATT
TGTTTAAAAACGAGGTTTGAAAACACTTATTTACCAAGCATGCTCTGGCT
CTTATTACAAACTGCACCACCAGTTTGGAAAGCTTGCCCCTGCGATCCAT
ATT
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