EY728443

Overview
NameEY728443
Unique NameEY728443
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length896
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_DICDI (Ubiquitin fusion degradation protein 1 homolog OS=Dictyostelium discoideum GN=ufd1 PE=3 SV=1)

HSP 1 Score: 243.432 bits (620), Expect = 1.288e-63
Identity = 127/283 (44.88%), Postives = 176/283 (62.19%), Query Frame = 1
Query:   94 FEQSYRCYPASFI--EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIAS-------------CFSXATAKAE--------------EASVETEPKFSPFTGVARRLDGKL-*HITSSCSFLGSKDSNCTSNGTGQPLQGHFTNAAN 852
            +EQ ++ +P SF+  EK  +ESG KI++PPSAL+ L+ L+I YPMLFE+ N  + + SHCGVLEFIAEEG+ Y+P WMM+NL L+EG+ + +KN TL KGT+VK+QP T +F+DISNPKA+LE +LR ++ LT  D IM+ YNN KYY+ ++E KP+NAISIIE D  VDFAPP+D KE   P  S              F  A+  A+              ++  + EPKF  F G   RLDGK+   + +S   L + ++N  +N        +  N +N
Sbjct:   25 YEQKFKAFPISFLPKEKHSLESGGKILLPPSALNALSRLNIQYPMLFEISNPISGKKSHCGVLEFIAEEGICYLPLWMMQNLQLKEGEFIDIKNATLAKGTFVKIQPRTSNFIDISNPKAVLENSLRKFATLTKDDEIMIDYNNTKYYLKVVELKPANAISIIEADVSVDFAPPMDSKEATSPSTSSPGSHVSGPSKGLTFGPASTSAKPIPGGKKKKDESDSDSDSDDEPKFKAFAGTGARLDGKVGTPLGTSPKTLNTNNNNNNNNNNNNNNNNNNNNNSN 307          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_RAT (Ubiquitin fusion degradation protein 1 homolog OS=Rattus norvegicus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 238.039 bits (606), Expect = 5.411e-62
Identity = 116/221 (52.49%), Postives = 154/221 (69.68%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASCFSXATAKAEEASVETEPKFSPFTGVARRLDGK 744
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+P+    S    +A+ +    E  F  F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGK 238          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_MOUSE (Ubiquitin fusion degradation protein 1 homolog OS=Mus musculus GN=Ufd1l PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.686e-61
Identity = 114/221 (51.58%), Postives = 154/221 (69.68%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASCFSXATAKAEEASVETEPKFSPFTGVARRLDGK 744
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++C+TTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEP++P+    S    +A+ +    E  F  F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACMTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPKRPVQHEES-IEGEADHSGYAGEVGFRAFSGSGNRLDGK 238          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_HUMAN (Ubiquitin fusion degradation protein 1 homolog OS=Homo sapiens GN=UFD1L PE=1 SV=3)

HSP 1 Score: 234.958 bits (598), Expect = 4.581e-61
Identity = 115/221 (52.04%), Postives = 153/221 (69.23%), Query Frame = 1
Query:   94 FEQSYRCYPASFIEKPQ----IESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASCFSXATAKAEEASVETEPKFSPFTGVARRLDGK 744
            F   YRC+  S +  P     +E G KIIMPPSALD+L+ L+I YPMLF+L N  ++R++HCGVLEF+A+EG+ Y+P+WMM+NLLL+EG +V+V++V L   TY K QP + DFLDI+NPKA+LE  LRN++CLTTGD I + YN K Y + ++ETKP  A+SIIE D  VDF  PL YKEPE+ +    S    +A+ +    E  F  F+G   RLDGK
Sbjct:   19 FSTQYRCFSVSMLAGPNDRSDVEKGGKIIMPPSALDQLSRLNITYPMLFKLTNKNSDRMTHCGVLEFVADEGICYLPHWMMQNLLLEEGGLVQVESVNLQVATYSKFQPQSPDFLDITNPKAVLENALRNFACLTTGDVIAINYNEKIYELRVMETKPDKAVSIIECDMNVDFDAPLGYKEPERQVQHEES-TEGEADHSGYAGELGFRAFSGSGNRLDGK 238          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_DROME (Ubiquitin fusion degradation protein 1 homolog OS=Drosophila melanogaster GN=Ufd1-like PE=1 SV=1)

HSP 1 Score: 221.476 bits (563), Expect = 5.241e-57
Identity = 116/247 (46.96%), Postives = 154/247 (62.35%), Query Frame = 1
Query:   34 FEYSFTVKMFFDGYGYHGTSFEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKEPEKPIASCFSXATAK-------AEEASVETEPKFSPFTGVARRLDGK 744
            F +S    MF +G  +H      +Y+C+  S +   E+  +E G KIIMPPSALD L  L+++YPMLF+L N    R SH GVLEF+A+EG  Y+P+WMMENLLL EGDI+ +++V+LP  T+ K QPH+ DFLDI+NPKA+LE  LRN++CLT GD I + YN K Y + ++ETKP NA+SIIE D  V+F  P+ YK+  +  AS      A        A   +   E     F G   RLDGK
Sbjct:    2 FHFSGFNMMFPEGRNFHA-----NYKCFSVSMLPGNERTDVEKGGKIIMPPSALDTLTRLNVEYPMLFKLTNVKKSRSSHAGVLEFVADEGKCYLPHWMMENLLLGEGDILNIESVSLPVATFSKFQPHSTDFLDITNPKAVLENALRNFACLTRGDVIAIKYNKKVYELCVLETKPGNAVSIIECDMNVEFEAPVGYKDHSETQASGSGQQGAAGTVGGEIAGATNAILEEVVETFKGSGVRLDGK 243          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_SCHPO (Ubiquitin fusion degradation protein 1 OS=Schizosaccharomyces pombe GN=ufd1 PE=2 SV=4)

HSP 1 Score: 197.593 bits (501), Expect = 8.105e-50
Identity = 91/183 (49.73%), Postives = 132/183 (72.13%), Query Frame = 1
Query:   94 FEQSYRCYPASFI---EKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNA---ISIIETDCEVDFAPPLDYKE 624
            F+  YRCYP + I   E+P +  G K+I+PPSAL++L+ L++ YPMLF+  N AAE+ +H GVLEFIAEEG +Y+PYWMM  L L+ GD+VRV N  + +G+YVKLQP + +FLDI++ +A+LE  LRN+S LT  D   + YN++ Y I +I+ +P ++   +S++ETD  VDF PP+ Y+E
Sbjct:   32 FDTRYRCYPVAMIPGEERPNVNYGGKVILPPSALEKLSRLNVSYPMLFDFENEAAEKKTHGGVLEFIAEEGRVYLPYWMMTTLSLEPGDLVRVINTDIAQGSYVKLQPQSVNFLDITDHRAVLENALRNFSTLTKSDIFEILYNDQVYQIKVIDVQPDDSRHVVSVVETDLVVDFDPPIGYEE 214          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_YEAST (Ubiquitin fusion degradation protein 1 OS=Saccharomyces cerevisiae GN=UFD1 PE=1 SV=1)

HSP 1 Score: 192.586 bits (488), Expect = 2.607e-48
Identity = 95/187 (50.80%), Postives = 128/187 (68.45%), Query Frame = 1
Query:   91 SFEQSYRCYPASF----IEKPQIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKP---SNAISIIETDCEVDFAPPLDYKEPE 630
            +FE+ +RCYP +     I K     G KI +PPSAL +L+ L+I YPMLF+L  N   RV+H GVLEFIAEEG +Y+P WMME L +Q G ++++ +  +P G +VKL+P + DFLDIS+PKA+LE  LRN+S LT  D I ++YN K + I I+E KP   S +I +IETD   DFAPP+ Y EP+
Sbjct:   20 TFEEFFRCYPIAMMNDRIRKDDANFGGKIFLPPSALSKLSMLNIRYPMLFKLTANETGRVTHGGVLEFIAEEGRVYLPQWMMETLGIQPGSLLQISSTDVPLGQFVKLEPQSVDFLDISDPKAVLENVLRNFSTLTVDDVIEISYNGKTFKIKILEVKPESSSKSICVIETDLVTDFAPPVGYVEPD 206          
BLAST of EY728443 vs. ExPASy Swiss-Prot
Match: UFD1_CAEEL (Ubiquitin fusion degradation protein 1 homolog OS=Caenorhabditis elegans GN=ufd-1 PE=1 SV=1)

HSP 1 Score: 179.489 bits (454), Expect = 2.284e-44
Identity = 97/236 (41.10%), Postives = 137/236 (58.05%), Query Frame = 1
Query:   91 SFEQSYRCYPASFIEKP------QIESGDKIIMPPSALDRLASLHIDYPMLFELRNNAAERVSHCGVLEFIAEEGMIYMPYWMMENLLLQEGDIVRVKNVTLPKGTYVKLQPHTKDFLDISNPKAILETTLRNYSCLTTGDSIMVAYNNKKYYIDIIETKPSNAISIIETDCEVDFAPPLDYKE------------PEKPIASCFSXATAKAEEASVETEPKFSPFTGVARRLDGK 744
            +++Q++  Y   F+         +I  G KI++P SAL+ L   +I  PMLF+L N A +RV+HCGVLEF A EG   +P WMM+ L L +GD +R+++ TLPK T+ KL+P + +FL+I+NPKA+LE  LR Y+CLT  D I  +Y  +     +++ KP+N++ IIE D  +DF PP  Y E            P  P AS F  A  KA  +    +   S F G  RRLDGK
Sbjct:   20 NYDQTFVVYGPVFLPNATQSKISEINYGGKILLPSSALNLLMQYNIPMPMLFKLTNMAVQRVTHCGVLEFSAPEGQAILPLWMMQQLGLDDGDTIRIESATLPKATFAKLKPMSLEFLNITNPKAVLEVELRKYACLTKNDRIPTSYAGQTLEFLVVDLKPANSVCIIECDVNLDFDPPEGYVEQPRQVTPAVTAKPPAPDASAFIGAGQKAGGSGGTGQNATSVFGGAGRRLDGK 255          
The following BLAST results are available for this feature:
BLAST of EY728443 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
UFD1_DICDI1.288e-6344.88Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_RAT5.411e-6252.49Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_MOUSE2.686e-6151.58Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_HUMAN4.581e-6152.04Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_DROME5.241e-5746.96Ubiquitin fusion degradation protein 1 homolog OS=... [more]
UFD1_SCHPO8.105e-5049.73Ubiquitin fusion degradation protein 1 OS=Schizosa... [more]
UFD1_YEAST2.607e-4850.80Ubiquitin fusion degradation protein 1 OS=Saccharo... [more]
UFD1_CAEEL2.284e-4441.10Ubiquitin fusion degradation protein 1 homolog OS=... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-G05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728443 ID=EY728443; Name=EY728443; organism=Citrus sinensis; type=EST; length=896bp
CCACGCGTCCGGCTGAAAGGTTGACTATCTTGGTTTGAATACTCATTCAC
AGTAAAAATGTTTTTTGATGGATATGGATATCATGGGACATCATTTGAGC
AGAGTTACCGATGTTACCCTGCATCATTTATTGAAAAGCCACAAATAGAA
AGTGGTGACAAAATTATAATGCCTCCTTCAGCCCTTGATCGCCTTGCATC
TTTGCATATTGATTATCCAATGTTGTTTGAGCTACGTAATAATGCGGCTG
AGCGGGTTTCCCACTGTGGAGTTCTTGAGTTTATTGCAGAGGAAGGCATG
ATCTATATGCCATACTGGATGATGGAGAACCTGCTTTTACAAGAGGGAGA
TATTGTGCGAGTGAAAAATGTGACACTTCCAAAGGGAACATATGTCAAAC
TTCAACCTCACACAAAGGACTTTCTCGATATTTCTAATCCCAAAGCCATC
TTGGAGACGACGTTAAGGAATTATTCCTGCTTGACCACTGGGGACAGTAT
TATGGTGGCATATAACAATAAGAAATATTACATTGACATTATAGAGACGA
AGCCTTCTAATGCAATAAGCATCATTGAGACTGACTGTGAGGTAGATTTT
GCACCTCCTCTGGATTATAAGGAACCTGAAAAACCAATTGCATCNTGCTT
CAGTANGGCAACAGCAAAAGCTGAAGAGGCTTCTGTTGAGACCGAACCAA
AATTCAGCCCTTTTACTGGAGTAGCTAGACGGTTGGATGGGAAACTTTGA
CATATCACCTCCTCCTGTTCCTTCTTAGGGTCCAAAGACAGCAACTGCAC
GTCTAATGGTACTGGGCAGCCTCTGCAGGGTCACTTCACAAATGCTGCAA
ACATCTCAGGAAAGCTCGGTTTGATCAATGCAGCCTCCATCTAAGA
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