EY728433

Overview
NameEY728433
Unique NameEY728433
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length691
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPEC_RALEH (Ribulose-phosphate 3-epimerase, chromosomal OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEC PE=3 SV=1)

HSP 1 Score: 159.844 bits (403), Expect = 1.209e-38
Identity = 78/107 (72.90%), Postives = 86/107 (80.37%), Query Frame = -3
Query:    3 HIMPSPTPNAMPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEASR 323
            H     T +      R+ PSILSADFARLGEEV  + A GAD +HFDVMDNHYVPNLTIGP+VC AIRP VS+PIDVHLMVEPVDAL+P+FAKAGAN ISFHPEASR
Sbjct:    2 HATELNTGHGSQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVPNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPLFAKAGANIISFHPEASR 108          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPEP_RALEH (Ribulose-phosphate 3-epimerase, plasmid OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=cbbEP PE=3 SV=1)

HSP 1 Score: 158.303 bits (399), Expect = 3.517e-38
Identity = 78/107 (72.90%), Postives = 85/107 (79.44%), Query Frame = -3
Query:    3 HIMPSPTPNAMPTTTRITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPHVSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEASR 323
            H     T +      R+ PSILSADFARLGEEV  + A GAD +HFDVMDNHYV NLTIGP+VC AIRP VS+PIDVHLMVEPVDAL+PMFAKAGAN ISFHPEASR
Sbjct:    2 HATEPNTGHGSQRAIRLAPSILSADFARLGEEVCAIEAGGADLVHFDVMDNHYVSNLTIGPLVCEAIRPLVSIPIDVHLMVEPVDALIPMFAKAGANLISFHPEASR 108          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_SERMA (Ribulose-phosphate 3-epimerase OS=Serratia marcescens GN=rpe PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 8.965e-34
Identity = 69/91 (75.82%), Postives = 80/91 (87.91%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSADFARLGE+  +V+AAG D +HFDVMDNHYVPNLTIGPMVC A+R + ++ PIDVHLMV+PVD +VP FAKAGA+YISFHPEAS
Sbjct:    6 IAPSILSADFARLGEDTANVLAAGGDVVHFDVMDNHYVPNLTIGPMVCEALRNYGITAPIDVHLMVKPVDRIVPDFAKAGASYISFHPEAS 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_HAEIN (Ribulose-phosphate 3-epimerase OS=Haemophilus influenzae GN=rpe PE=3 SV=1)

HSP 1 Score: 137.887 bits (346), Expect = 4.919e-32
Identity = 65/91 (71.43%), Postives = 79/91 (86.81%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSAD ARLG++V++V+ AGAD IHFDVMDNHYVPNLT GP VC A+R + ++ PIDVHLMV+PVD ++P FAKAGANYI+FHPE+S
Sbjct:    6 IAPSILSADLARLGDDVQNVLNAGADVIHFDVMDNHYVPNLTFGPAVCQALRDYGITAPIDVHLMVKPVDRIIPDFAKAGANYITFHPESS 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_BUCAP (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Schizaphis graminum GN=rpe PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 7.103e-31
Identity = 60/91 (65.93%), Postives = 79/91 (86.81%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            +  SILSADFARLGE+ +  + AG+DWIHFDVMDNHYVPNLT+GPM+  A+R + ++VPIDVHLMV+PVD L+P FA+AGA++I+FHPE++
Sbjct:    6 LASSILSADFARLGEDTKKAIDAGSDWIHFDVMDNHYVPNLTMGPMILKALRNYNITVPIDVHLMVKPVDNLIPQFAEAGADFITFHPEST 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_BUCAI (Ribulose-phosphate 3-epimerase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=rpe PE=3 SV=1)

HSP 1 Score: 132.88 bits (333), Expect = 1.582e-30
Identity = 60/91 (65.93%), Postives = 79/91 (86.81%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            + PSILSADFARLGE+++ V+ AG+D IHFDVMDNHYVPNL++GPM+  ++R + ++ PIDVHLMV+PVD L+P FAKAGA +I+FHPEA+
Sbjct:    6 LAPSILSADFARLGEDIKKVIDAGSDLIHFDVMDNHYVPNLSMGPMILESLRNYNITAPIDVHLMVKPVDNLIPQFAKAGATFITFHPEAT 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_SHIFL (Ribulose-phosphate 3-epimerase OS=Shigella flexneri GN=rpe PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSADFARLGE+    +AAGAD +HFDVMDNHYVPNLTIGPMV  ++R + ++ PIDVHLMV+PVD +VP FA AGA+ I+FHPEAS
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEAS 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_ECOLI (Ribulose-phosphate 3-epimerase OS=Escherichia coli (strain K12) GN=rpe PE=1 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSADFARLGE+    +AAGAD +HFDVMDNHYVPNLTIGPMV  ++R + ++ PIDVHLMV+PVD +VP FA AGA+ I+FHPEAS
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEAS 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_ECOL6 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O6 GN=rpe PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSADFARLGE+    +AAGAD +HFDVMDNHYVPNLTIGPMV  ++R + ++ PIDVHLMV+PVD +VP FA AGA+ I+FHPEAS
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEAS 96          
BLAST of EY728433 vs. ExPASy Swiss-Prot
Match: RPE_ECO57 (Ribulose-phosphate 3-epimerase OS=Escherichia coli O157:H7 GN=rpe PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.604e-30
Identity = 64/91 (70.33%), Postives = 76/91 (83.52%), Query Frame = -3
Query:    6 ITPSILSADFARLGEEVRDVVAAGADWIHFDVMDNHYVPNLTIGPMVCAAIRPH-VSVPIDVHLMVEPVDALVPMFAKAGANYISFHPEAS 275
            I PSILSADFARLGE+    +AAGAD +HFDVMDNHYVPNLTIGPMV  ++R + ++ PIDVHLMV+PVD +VP FA AGA+ I+FHPEAS
Sbjct:    6 IAPSILSADFARLGEDTAKALAAGADVVHFDVMDNHYVPNLTIGPMVLKSLRNYGITAPIDVHLMVKPVDRIVPDFAAAGASIITFHPEAS 96          
The following BLAST results are available for this feature:
BLAST of EY728433 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 151
Match NameE-valueIdentityDescription
RPEC_RALEH1.209e-3872.90Ribulose-phosphate 3-epimerase, chromosomal OS=Ral... [more]
RPEP_RALEH3.517e-3872.90Ribulose-phosphate 3-epimerase, plasmid OS=Ralston... [more]
RPE_SERMA8.965e-3475.82Ribulose-phosphate 3-epimerase OS=Serratia marcesc... [more]
RPE_HAEIN4.919e-3271.43Ribulose-phosphate 3-epimerase OS=Haemophilus infl... [more]
RPE_BUCAP7.103e-3165.93Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_BUCAI1.582e-3065.93Ribulose-phosphate 3-epimerase OS=Buchnera aphidic... [more]
RPE_SHIFL4.604e-3070.33Ribulose-phosphate 3-epimerase OS=Shigella flexner... [more]
RPE_ECOLI4.604e-3070.33Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECOL64.604e-3070.33Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]
RPE_ECO574.604e-3070.33Ribulose-phosphate 3-epimerase OS=Escherichia coli... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728433 ID=EY728433; Name=EY728433; organism=Citrus sinensis; type=EST; length=691bp
TGGCGGCTGGCTTCCGGGTGGAAGCTGATGTAGTTGGCGCCGGCCTTGGC
GAACATCGGCACCAGGGCGTCCACCGGCTCGACCATGAGGTGCACGTCGA
TCGGCACGGAAACATGGGGACGGATCGCCGCGCAGACCATCGGGCCGATG
GTCAGGTTGGGCACGTAGTGGTTGTCCATCACATCGAAATGGATCCAGTC
GGCGCCGGCGGCGACGACGTCACGCACTTCCTCGCCCAGGCGGGCGAAGT
CGGCGGACAGGATGCTGGGGGTGATGCGGGTGGTGGTAGGCATGGCGTTC
GGGGTGGGTGAAGGCATAATGTGCCATTATTGCAGCTTGCTCGTGCCACA
CAGGAAAGGACTGTGAAACCCTACGACCTGAGCGTCTCCGTCTCGCCGCG
CTTCGTGCCAGAACAGTCCGATCCGGGTGAGCAGCAGTTCGTGTTCGCCT
ATACCGTCCGCATCACCAATACCGGCGAGCATCCGGCCCAGGTGATCAGC
CGCCACTGGATTATCACCGATGGCACCAGCGCGTGCAGGAAGTGCGCGGG
CTGGGCGTGGTCGGCCANCAGCCCCTGCTGGCGCCCGGCGAAAACTTCGA
ACTAACCANCGGCTGTCCCCTCCCCACCCCGGTCGGGACGATGGGCGGCG
CCTACCATTGCTTCNGCGAAAACGGGATCCCGTTCGAANTG
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