EY728420

Overview
NameEY728420
Unique NameEY728420
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length862
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728420_ssr681 microsatellite EY728420_ssr681:681..692. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11740 contig Csv1_Contig11740:1..864. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728420 vs. ExPASy Swiss-Prot
Match: YI31B_YEAST (Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-I PE=3 SV=2)

HSP 1 Score: 111.694 bits (278), Expect = 5.495e-24
Identity = 75/258 (29.07%), Postives = 122/258 (47.29%), Query Frame = 2
Query:   14 ALETWQHYLLPKEFVIHTDHESXXXXXXXXXXXXRHAKWVEFIEPFPYVIKYKQGKENVVADALSRRYALISTLNAKLLGFEYIKELYAND-------------------PDFANVFNACEK-----VAFGKFYK-HDGLLFRENKLCVPHSSLRELLVREAHGGGLM-GHFGIAKTLDVLKEHFFWPHMKRDVERICEKCITCKHAKS-RVLPHGLYNPLPIPNEPWVDISMDFVLGLTRSKRGNDSVFVVVDRFQR 706
            AL  +++ L  K F + TDH S            R  +W++ +  + + ++Y  G +NVVADA+SR    I+   ++ +  E  K  Y +D                   P+  + F + +K       F K Y   D +++ +++L VP    +  ++R  H   L  GHFG+  TL  +   ++WP ++  + +    C+ C+  KS R   HGL  PLPI    W+DISMDFV GL  +    + + VVVDRF +
Sbjct:  969 ALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAIYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQ-QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSK 1225          
BLAST of EY728420 vs. ExPASy Swiss-Prot
Match: YG31B_YEAST (Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomyces cerevisiae GN=TY3B-G PE=1 SV=3)

HSP 1 Score: 111.694 bits (278), Expect = 5.495e-24
Identity = 75/258 (29.07%), Postives = 122/258 (47.29%), Query Frame = 2
Query:   14 ALETWQHYLLPKEFVIHTDHESXXXXXXXXXXXXRHAKWVEFIEPFPYVIKYKQGKENVVADALSRRYALISTLNAKLLGFEYIKELYAND-------------------PDFANVFNACEK-----VAFGKFYK-HDGLLFRENKLCVPHSSLRELLVREAHGGGLM-GHFGIAKTLDVLKEHFFWPHMKRDVERICEKCITCKHAKS-RVLPHGLYNPLPIPNEPWVDISMDFVLGLTRSKRGNDSVFVVVDRFQR 706
            AL  +++ L  K F + TDH S            R  +W++ +  + + ++Y  G +NVVADA+SR    I+   ++ +  E  K  Y +D                   P+  + F + +K       F K Y   D +++ +++L VP    +  ++R  H   L  GHFG+  TL  +   ++WP ++  + +    C+ C+  KS R   HGL  PLPI    W+DISMDFV GL  +    + + VVVDRF +
Sbjct:  943 ALHHFRYMLHGKHFTLRTDHISLLSLQNKNEPARRVQRWLDDLATYDFTLEYLAGPKNVVADAISRAVYTITPETSRPIDTESWKSYYKSDPLCSAVLIHMKELTQHNVTPEDMSAFRSYQKKLELSETFRKNYSLEDEMIYYQDRLVVPIKQ-QNAVMRLYHDHTLFGGHFGVTVTLAKISPIYYWPKLQHSIIQYIRTCVQCQLIKSHRPRLHGLLQPLPIAEGRWLDISMDFVTGLPPTSNNLNMILVVVDRFSK 1199          
BLAST of EY728420 vs. ExPASy Swiss-Prot
Match: RTF23_SCHPO (Retrotransposable element Tf2 155 kDa protein type 3 OS=Schizosaccharomyces pombe GN=Tf2-11 PE=4 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 73/256 (28.52%), Postives = 123/256 (48.05%), Query Frame = 2
Query:   14 ALETWQHYLLP--KEFVIHTDHESXXXXXXXXXXXX--RHAKWVEFIEPFPYVIKYKQGKENVVADALSR------------RYALISTLNAKLLGFEYIKEL---YANDPDFANVFNACEKVAFGKFYKHDGLLFR-ENKLCVPHSS-LRELLVREAHGGGLMGHFGIAKTLDVLKEHFFWPHMKRDVERICEKCITCKHAKSR-VLPHGLYNPLPIPNEPWVDISMDFVLGLTRSKRGNDSVFVVVDRFQRWRI 715
            +L+ W+HYL    + F I TDH +              R A+W  F++ F + I Y+ G  N +ADALSR                I+ +N   +  ++  ++   Y ND    N+ N  +K         DGLL   ++++ +P+ + L   ++++ H  G + H GI    +++   F W  +++ ++   + C TC+  KSR   P+G   P+P    PW  +SMDF+  L  S  G +++FVVVDRF +  I
Sbjct:  762 SLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAI 1016          
BLAST of EY728420 vs. ExPASy Swiss-Prot
Match: RTF22_SCHPO (Retrotransposable element Tf2 155 kDa protein type 2 OS=Schizosaccharomyces pombe GN=Tf2-7 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 73/256 (28.52%), Postives = 123/256 (48.05%), Query Frame = 2
Query:   14 ALETWQHYLLP--KEFVIHTDHESXXXXXXXXXXXX--RHAKWVEFIEPFPYVIKYKQGKENVVADALSR------------RYALISTLNAKLLGFEYIKEL---YANDPDFANVFNACEKVAFGKFYKHDGLLFR-ENKLCVPHSS-LRELLVREAHGGGLMGHFGIAKTLDVLKEHFFWPHMKRDVERICEKCITCKHAKSR-VLPHGLYNPLPIPNEPWVDISMDFVLGLTRSKRGNDSVFVVVDRFQRWRI 715
            +L+ W+HYL    + F I TDH +              R A+W  F++ F + I Y+ G  N +ADALSR                I+ +N   +  ++  ++   Y ND    N+ N  +K         DGLL   ++++ +P+ + L   ++++ H  G + H GI    +++   F W  +++ ++   + C TC+  KSR   P+G   P+P    PW  +SMDF+  L  S  G +++FVVVDRF +  I
Sbjct:  762 SLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAI 1016          
BLAST of EY728420 vs. ExPASy Swiss-Prot
Match: RTF21_SCHPO (Retrotransposable element Tf2 155 kDa protein type 1 OS=Schizosaccharomyces pombe GN=Tf2-1 PE=2 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 4.354e-21
Identity = 73/256 (28.52%), Postives = 123/256 (48.05%), Query Frame = 2
Query:   14 ALETWQHYLLP--KEFVIHTDHESXXXXXXXXXXXX--RHAKWVEFIEPFPYVIKYKQGKENVVADALSR------------RYALISTLNAKLLGFEYIKEL---YANDPDFANVFNACEKVAFGKFYKHDGLLFR-ENKLCVPHSS-LRELLVREAHGGGLMGHFGIAKTLDVLKEHFFWPHMKRDVERICEKCITCKHAKSR-VLPHGLYNPLPIPNEPWVDISMDFVLGLTRSKRGNDSVFVVVDRFQRWRI 715
            +L+ W+HYL    + F I TDH +              R A+W  F++ F + I Y+ G  N +ADALSR                I+ +N   +  ++  ++   Y ND    N+ N  +K         DGLL   ++++ +P+ + L   ++++ H  G + H GI    +++   F W  +++ ++   + C TC+  KSR   P+G   P+P    PW  +SMDF+  L  S  G +++FVVVDRF +  I
Sbjct:  762 SLKHWRHYLESTIEPFKILTDHRNLIGRITNESEPENKRLARWQLFLQDFNFEINYRPGSANHIADALSRIVDETEPIPKDSEDNSINFVNQISITDDFKNQVVTEYTNDTKLLNLLNNEDKRVEENIQLKDGLLINSKDQILLPNDTQLTRTIIKKYHEEGKLIHPGIELLTNIILRRFTWKGIRKQIQEYVQNCHTCQINKSRNHKPYGPLQPIPPSERPWESLSMDFITALPESS-GYNALFVVVDRFSKMAI 1016          
The following BLAST results are available for this feature:
BLAST of EY728420 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
YI31B_YEAST5.495e-2429.07Transposon Ty3-I Gag-Pol polyprotein OS=Saccharomy... [more]
YG31B_YEAST5.495e-2429.07Transposon Ty3-G Gag-Pol polyprotein OS=Saccharomy... [more]
RTF23_SCHPO4.354e-2128.52Retrotransposable element Tf2 155 kDa protein type... [more]
RTF22_SCHPO4.354e-2128.52Retrotransposable element Tf2 155 kDa protein type... [more]
RTF21_SCHPO4.354e-2128.52Retrotransposable element Tf2 155 kDa protein type... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728420 ID=EY728420; Name=EY728420; organism=Citrus sinensis; type=EST; length=862bp
CCACGCGTCCGGAGCTTTGGAAACTTGGCAACATTATCTTCTACCTAAAG
AGTTTGTTATACACACTGATCATGAGTCCTTGAAGCATTTGAAAGGGCAA
GGTAAGTTACATAAGAGACATGCCAAATGGGTTGAATTTATTGAGCCATT
TCCTTATGTGATCAAATATAAACAAGGTAAGGAGAATGTGGTGGCTGATG
CATTATCTAGAAGGTATGCACTTATCTCTACATTAAATGCAAAGTTGTTA
GGATTTGAGTACATTAAAGAATTATATGCTAACGATCCTGATTTTGCTAA
TGTGTTTAATGCTTGTGAGAAAGTTGCATTTGGTAAATTCTATAAGCATG
ATGGGCTTTTATTTAGAGAAAATAAATTGTGTGTGCCTCATAGTTCTTTG
CGTGAATTGCTTGTGCGTGAAGCTCATGGGGGTGGTTTAATGGGACATTT
TGGCATTGCAAAGACTTTAGATGTTTTAAAAGAACACTTCTTTTGGCCAC
ATATGAAACGTGATGTTGAAAGAATATGTGAGAAGTGTATCACTTGTAAA
CATGCTAAGTCAAGAGTTTTACCCCATGGATTGTATAACCCTCTGCCCAT
ACCTAATGAACCTTGGGTTGATATTTCTATGGACTTTGTTTTGGGTTTAA
CTAGGTCAAAAAGGGGAAATGATTCTGTTTTTGTTGTTGTTGATAGGTTT
CAAAGATGGCGCATTCATTCCATGTCATAAAACTGATGATGCGAACAGCA
TAGCTAATTTGTTTTCAAAGGAAAAGTCAGGTGCATTGAGTACCAGGAGC
ATAGTTCCGATCGAGATGCAGTTCTTGACCCACTTTTGGAAAACTTGGGG
GTAAGTGGGGTC
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