EY728417

Overview
NameEY728417
Unique NameEY728417
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10687 contig Csv1_Contig10687:694..1573. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728417 vs. ExPASy Swiss-Prot
Match: DNLI4_ARATH (DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.995e-49
Identity = 90/181 (49.72%), Postives = 128/181 (70.72%), Query Frame = 2
Query:   29 RYYLHLSDSSKKKLQEEVDEFSDLYFWDLDLADIKQLLSNVDRSEDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPLSPDWEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSHWLEDCLAKEQKSEEYAYSLKPTGMQES 571
            +Y+LHL+D+S+ KLQ+++DEFSD Y+WDLDL  +KQ+LSN  +SED K+IDYYKKK CP+ +WSC   CC+YFY  ++ LS + E            E+   GGKV NNLA+A+H+VVL++    ++F  +++SF+  EK LL  K+LHVV SHWLE+ L +E+K  E  Y+L+P  M+ES
Sbjct:  737 KYFLHLTDASRTKLQDDIDEFSDSYYWDLDLEGLKQVLSNAKQSEDSKSIDYYKKKLCPEKRWSCLLSCCVYFYPYSQTLSTEEEALLGIMAKRLMLEVLMAGGKVSNNLAHASHLVVLAMAEEPLDFTLVSKSFSEMEKRLLLKKRLHVVSSHWLEESLQREEKLCEDVYTLRPKYMEES 917          
BLAST of EY728417 vs. ExPASy Swiss-Prot
Match: DNLI4_ORYSJ (Putative DNA ligase 4 OS=Oryza sativa subsp. japonica GN=LIG4 PE=2 SV=2)

HSP 1 Score: 144.821 bits (364), Expect = 6.063e-34
Identity = 69/170 (40.59%), Postives = 110/170 (64.71%), Query Frame = 2
Query:   65 KLQEEVDEFSDLYFWDLDLADIKQLLSNVDRS-EDPKTIDYYKKKYCPQDKWSCFHGCCIYFYHSTEPL-SPDWEVXXXXXXXXXXXEISFHGGKVCNNLANATHVVVLSVLGYDVNFNSLTESFTAREKHLLWNKKLHVVRSHWLEDCLAKEQKSEEYAYSLKPTGMQE 568
            K  EE+D ++D ++WD+D++D+KQ+ SN+DR+  D   + +YKKKYC  +++  F GCC+YFYH+  PL + D+ V           +++ HGG+VC+ LA ATH++++SVL    NF+ L +S    E+  L +K+L VV + WLED + K+ +  E  YSLKP  ++E
Sbjct:  776 KFPEEIDSYADYFYWDIDISDLKQIFSNMDRAVVDSNMVHHYKKKYCADERFCFFQGCCVYFYHA--PLVNADYNVISDLALKRVKQDLTMHGGQVCSILAPATHLIIVSVL-QAYNFDMLYKSLPPAERRYLHDKRLQVVSNKWLEDSVEKQTRLPETTYSLKPDTLEE 942          
The following BLAST results are available for this feature:
BLAST of EY728417 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
DNLI4_ARATH2.995e-4949.72DNA ligase 4 OS=Arabidopsis thaliana GN=LIG4 PE=1 ... [more]
DNLI4_ORYSJ6.063e-3440.59Putative DNA ligase 4 OS=Oryza sativa subsp. japon... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-E01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728417 ID=EY728417; Name=EY728417; organism=Citrus sinensis; type=EST; length=881bp
CACGCGTCCGTGTATATCTTTCTTTATAAGGTACTACCTTCATCTATCTG
ACTCTTCGAAGAAAAAGCTACAAGAAGAAGTTGATGAATTTTCTGACCTG
TACTTTTGGGATCTTGACCTTGCAGATATCAAACAGCTCTTAAGCAATGT
TGATAGATCAGAAGACCCCAAAACTATTGATTATTATAAGAAGAAGTACT
GTCCACAGGACAAGTGGTCTTGCTTTCATGGCTGCTGCATTTACTTCTAC
CATTCAACAGAGCCTTTGAGTCCTGATTGGGAAGTTCTATTGGGGCTTGC
CCTGAGGAGATTGAAGCTTGAAATTTCCTTTCATGGCGGTAAAGTCTGCA
ACAATCTTGCAAATGCTACCCACGTGGTGGTCTTGTCAGTACTGGGATAT
GATGTGAACTTTAATTCTCTTACAGAAAGTTTCACTGCCAGAGAGAAACA
TCTTTTATGGAACAAGAAGTTGCATGTTGTTAGATCCCACTGGTTGGAAG
ATTGCTTGGCGAAGGAGCAAAAGTCGGAAGAATACGCATACAGCTTGAAG
CCCACTGGCATGCAAGAGTCGTACCTTGAATTGTGCGAAGAAGACCTGGA
TATGGAAGAACCTCATCTACATTGGAAACTTCAGACCAACAGAATGTGTC
ATCTTTCCCGGACGGTGATGCTAAGCAGAGAGGAACCANAGGTGTTTCCC
CGCCCTCCCCCNGANAGAGGGGAAAGGGAAAGGGAAGACCTGCTGGTGGA
AGCGCAACAAAAAAAATCAGTGTCACCTTCCTCGGAAAAGGGCCATGTAG
CATTAACTTCCANGATACCCAATGATCGATGAAGTGTGCTGTGATGAGCG
GGATCGAGAATCTCGGAGCATCTGGATCGAT
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