EY728389

Overview
NameEY728389
Unique NameEY728389
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length894
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728389_ssr657 microsatellite EY728389_ssr657:657..668. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728389 vs. ExPASy Swiss-Prot
Match: BAHD1_ARATH (BAHD acyltransferase At5g47980 OS=Arabidopsis thaliana GN=BAHD1 PE=2 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 5.107e-12
Identity = 55/212 (25.94%), Postives = 96/212 (45.28%), Query Frame = 3
Query:    3 RVRGRVGFILKSAMLASRST--ASSRFVLHQAVNLR-RLTEPRLSPCSVGNLFLWATAAYNMEHAAEMELHGLVARMKQAVGK--------INSEYLKTLHGDEGFPKVCEYIKRIEEVSAHKNLEAFTFSSWVKFGFNEVDFGWGNPIWSGIFGEVGSNSFRNLTFFKETRSANYDNAVEAWVTLDEKIMSLLEHDPQFLAFASPNPSILL 605
            RV   +  I + A  AS +        ++ Q+++LR R+    LSP ++GNL             +E+E+  +VA  ++   +        +N  +  T  G +    +  Y+  ++      N++ +T SSW +  F EVDFGWG P W G+    G    ++   +     A     VE WV + E+ M+    D + L++AS NP +L+
Sbjct:  243 RVEAVMSLIWRCARNASHANLIVPRATMMTQSMDLRLRIPTNVLSPDAIGNL--QGVFFLKRGPGSEIEISEVVAEFRKEKEEFNEMIKENVNGGHTNTTLGQKIMSGIANYMSELKP-----NIDTYTMSSWCRKAFYEVDFGWGRPAWVGL----GHQDIQDGVMYVLLVDAKDGEGVEVWVGIPEQDMAAFVCDQELLSYASLNPPVLI 443          
BLAST of EY728389 vs. ExPASy Swiss-Prot
Match: DAT_CATRO (Deacetylvindoline O-acetyltransferase OS=Catharanthus roseus GN=DAT PE=1 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 5.647e-11
Identity = 60/209 (28.71%), Postives = 97/209 (46.41%), Query Frame = 3
Query:    3 RVRGRVGFILKSAMLASRSTASSR-------FVLHQAVNLRRLTEPRLSPCSVGNL--FLWATAAYNMEHAAEMELHGLVA----RMKQAVGKINSEYLKTLHGDEGFPKVCEYIKRIEE--VSAHKNLEAFTFSSWVKFGFNEVDFGWGNPIWSGIFGEVGSNSFRNLTFFKETRSANYDNAVEAWVTLDEKIMSLLEHDPQFLAFAS 584
            RV     F+ + A +A +S A +        F + QA+NLR + E  L   SVGNL    ++      ++  E E   LV     + KQ +  ++ E L  +   E      E++K ++E  +S   +++A+   SW +F F +VDFGWG PIW  +F     N    + +         D  +EA V+ +++ MS  E + Q L F S
Sbjct:  243 RVEVLTAFLSRCATVAGKSAAKNNNCGQSLPFPVLQAINLRPILE--LPQNSVGNLVSIYFSRTIKENDYLNEKEYTKLVINELRKEKQKIKNLSREKLTYVAQME------EFVKSLKEFDISNFLDIDAYLSDSWCRFPFYDVDFGWGKPIWVCLFQPYIKNCVVMMDY-----PFGDDYGIEAIVSFEQEKMSAFEKNEQLLQFVS 438          
The following BLAST results are available for this feature:
BLAST of EY728389 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
BAHD1_ARATH5.107e-1225.94BAHD acyltransferase At5g47980 OS=Arabidopsis thal... [more]
DAT_CATRO5.647e-1128.71Deacetylvindoline O-acetyltransferase OS=Catharant... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-003-B02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728389 ID=EY728389; Name=EY728389; organism=Citrus sinensis; type=EST; length=894bp
CACGCGTCCGCGGACGCGTGGGATTCATTCTGAAGTCGGCCATGCTAGCT
TCAAGATCAACAGCAAGTTCACGATTTGTATTGCATCAAGCGGTGAACCT
TCGAAGACTAACAGAACCAAGATTATCGCCCTGCTCTGTTGGGAACCTGT
TTCTGTGGGCAACCGCCGCTTATAATATGGAGCATGCAGCTGAAATGGAG
CTGCATGGATTGGTGGCACGTATGAAGCAAGCTGTGGGGAAAATCAATAG
TGAGTACTTAAAAACATTACATGGTGATGAAGGGTTTCCAAAAGTGTGTG
AGTATATAAAGAGAATCGAAGAGGTCTCTGCCCACAAAAATTTAGAAGCC
TTCACATTTTCCAGTTGGGTCAAATTTGGTTTCAATGAAGTTGATTTTGG
GTGGGGGAATCCAATTTGGAGCGGCATTTTTGGAGAAGTCGGTTCTAATT
CTTTCCGAAATTTGACATTTTTTAAGGAAACAAGAAGTGCTAATTATGAT
AATGCAGTGGAGGCATGGGTGACATTAGATGAAAAAATAATGTCTCTATT
GGAGCATGATCCTCAGTTTTTGGCCTTTGCTTCGCCGAATCCGAGCATAT
TATTGTTTGATGTTTGTCGATTCTGGAAAGTTTTTTGTTCATGATGGATG
ATACTGGCTAGCTAGCTAGTGGCTACTACTAAGCAACTGATGGTGGTGAT
AGATTTTGAAGATGGCAAGTACCTGAGTTATCGAAAATGCTGCATGTTCT
GGGACGAAATAAAGGTGATTTTGTNAAATTAATTAATAATAAAGACGATG
ATTTTACCTCCGGAAAAAAAAAAAAAAAACAAAAAAGAAGGGGCGGCGCC
CAGAAGATCCGGGTTCGTTCGCGTTGTTGAAAGCATAGCTTCCT
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