EY728366

Overview
NameEY728366
Unique NameEY728366
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length639
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of EY728366 vs. ExPASy Swiss-Prot
Match: SDG40_ARATH (Protein SET DOMAIN GROUP 40 OS=Arabidopsis thaliana GN=SDG40 PE=2 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.158e-27
Identity = 74/187 (39.57%), Postives = 99/187 (52.94%), Query Frame = 2 
Query:    8 SANDKVFISLEPGMYS-GCSWPRESQYVDQDGKPSFALLSALRLWMTPANQRS-----------------------------------LPTSKEEDALLLCAIDKIQDINTATELKKVLSDFGGEVSTFLEN--YYVQCRQRGAKLSLSRKTKLSMQRWKLAIQWRLRYKKTLADCISYCDYTVNCL 454
            ++NDKVFI LE  ++S   SWP++S Y+ QDGK SFAL+S LRLW+ P +QR                                    LPTS  ED +LL  IDK+QD     E K+  + FG EV  FL+    +      G  +  SRKT   + +W+ ++QWRL YK+TLADCISYC+  +N L
Sbjct:  296 NSNDKVFIPLETSLFSLASSWPKDSLYIHQDGKLSFALISTLRLWLIPQSQRDKSVMRLVYAGSQISVKNEILVMKWMSEKCGSVLRDLPTSVTEDTVLLHNIDKLQDPELRLEQKETEA-FGSEVRAFLDANCLWDVTVLSGKPIEFSRKTSRMLSKWRWSVQWRLSYKRTLADCISYCNEKMNNL 481
The following BLAST results are available for this feature:
BLAST of EY728366 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
SDG40_ARATH3.158e-2739.57Protein SET DOMAIN GROUP 40 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-G09-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728366 ID=EY728366; Name=EY728366; organism=Citrus sinensis; type=EST; length=639bp
CCACGCGTCCGCAAATGACAAGGTTTTTATATCCTTGGAACCTGGCATGT
ATTCCGGTTGTTCGTGGCCCCGTGAATCACAATACGTTGACCAAGATGGT
AAGCCATCGTTTGCTCTCCTCTCTGCTTTGCGGTTGTGGATGACACCAGC
GAACCAACGGAGTTTGCCGACATCAAAAGAGGAAGATGCCTTATTGCTGT
GCGCCATTGATAAAATCCAAGACATCAATACGGCAACAGAACTGAAAAAG
GTTCTGTCAGATTTTGGAGGTGAGGTCTCTACATTCTTAGAAAACTACTA
TGTGCAATGCAGGCAGAGGGGTGCTAAGTTATCATTATCCCGGAAGACTA
AATTGTCTATGCAGAGGTGGAAATTAGCAATTCAGTGGAGACTTAGATAT
AAGAAAACTCTTGCTGACTGCATTTCTTATTGTGATTATACAGTGAATTG
TCTTCCTAATGATAACGTTCCGACTGGTGGAATTAAATAGTGCCTAATGT
AACTCACATCTTTGTTACGAAAGTGTAGACTCACTATTCCTGATTTATTT
TTGAGCCAAAATTCATCTCCAGGTAAAATTTTTGGATAGAATTGGATCGA
TAGCCAAAATTCATTTCAAAAAAAAAAAAAAAAAAAAAA
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