EY728350

Overview
NameEY728350
Unique NameEY728350
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig4864 contig Csv1_Contig4864:482..1408. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD3_PONAB (YTH domain family protein 3 OS=Pongo abelii GN=YTHDF3 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSPKWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM +++     ++    +DKW G+F  K     +  P   LR +  + +D++ VTNS  T
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN---GKGPLYLLFSVNGSGHFCGVAEM-KSVVDYNAYAGVWSQDKWKGKFEVKWIF-VKDVPNNQLRHIRLENNDNKPVTNSRDT 535          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD3_MOUSE (YTH domain family protein 3 OS=Mus musculus GN=Ythdf3 PE=1 SV=2)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSPKWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM +++     ++    +DKW G+F  K     +  P   LR +  + +D++ VTNS  T
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN---GKGPLYLLFSVNGSGHFCGVAEM-KSVVDYNAYAGVWSQDKWKGKFEVKWIF-VKDVPNNQLRHIRLENNDNKPVTNSRDT 535          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD3_HUMAN (YTH domain family protein 3 OS=Homo sapiens GN=YTHDF3 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 3.248e-17
Identity = 55/138 (39.86%), Postives = 77/138 (55.80%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSPKWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM +++     ++    +DKW G+F  K     +  P   LR +  + +D++ VTNS  T
Sbjct:  403 NYNPKDFDWNLKNGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDAAYRSLN---GKGPLYLLFSVNGSGHFCGVAEM-KSVVDYNAYAGVWSQDKWKGKFEVKWIF-VKDVPNNQLRHIRLENNDNKPVTNSRDT 535          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD2_MACFA (YTH domain family protein 2 OS=Macaca fascicularis GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSP---KWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM  A+  +     WS    +DKW G+F  +     +  P   LR +  + ++++ VTNS  T
Sbjct:  397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN---GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIF-VKDVPNSQLRHIRLENNENKPVTNSRDT 529          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD2_HUMAN (YTH domain family protein 2 OS=Homo sapiens GN=YTHDF2 PE=1 SV=2)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSP---KWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM  A+  +     WS    +DKW G+F  +     +  P   LR +  + ++++ VTNS  T
Sbjct:  397 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN---GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIF-VKDVPNSQLRHIRLENNENKPVTNSRDT 529          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD2_BOVIN (YTH domain family protein 2 OS=Bos taurus GN=YTHDF2 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 56/141 (39.72%), Postives = 77/141 (54.61%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRALKPSP---KWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            +YN  DF  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LDAAYR      G       F V    HF GV EM  A+  +     WS    +DKW G+F  +     +  P   LR +  + ++++ VTNS  T
Sbjct:  398 NYNPKDFDWNLKHGRVFIIKSYSEDDIHRSIKYNIWCSTEHGNKRLDAAYRSMN---GKGPVYLLFSVNGSGHFCGVAEMKSAVDYNTCAGVWS----QDKWKGRFDVRWIF-VKDVPNSQLRHIRLENNENKPVTNSRDT 530          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD1_MOUSE (YTH domain family protein 1 OS=Mus musculus GN=Ythdf1 PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 2.750e-16
Identity = 57/141 (40.43%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRAL---KPSPKWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            SYN  +F  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LD A+R S  + G    L  F V    HF GV EM   +     +  WS    +DKW G+F  K     +  P   LR +  + +D++ VTNS  T
Sbjct:  376 SYNPKEFDWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDGAFR-SMSSKGPVYLL--FSVNGSGHFCGVAEMKSPVDYGTSAGVWS----QDKWKGKFDVKWIF-VKDVPNNQLRHIRLENNDNKPVTNSRDT 508          
BLAST of EY728350 vs. ExPASy Swiss-Prot
Match: YTHD1_HUMAN (YTH domain family protein 1 OS=Homo sapiens GN=YTHDF1 PE=1 SV=1)

HSP 1 Score: 83.5741 bits (205), Expect = 1.782e-15
Identity = 55/141 (39.01%), Postives = 78/141 (55.32%), Query Frame = 3
Query:  483 SYNQLDFVTNYKVAKFFIIKSYSEDNVHKSIKYGLWASTPNGHKKLDAAYRQSKENMGHARTLCCFRVMLVPHFVGVGEMVRAL---KPSPKWSTNGLKDKWSGQFPRKVAHNERRSPAGPLRTLYCKKSDHRHVTNSSRT 896
            SYN  +F  N K  + FIIKSYSED++H+SIKY +W ST +G+K+LD+A+R    + G    L  F V    HF GV EM   +     +  WS    +DKW G+F  +     +  P   LR +  + +D++ VTNS  T
Sbjct:  376 SYNPKEFEWNLKSGRVFIIKSYSEDDIHRSIKYSIWCSTEHGNKRLDSAFR-CMSSKGPVYLL--FSVNGSGHFCGVAEMKSPVDYGTSAGVWS----QDKWKGKFDVQWIF-VKDVPNNQLRHIRLENNDNKPVTNSRDT 508          
The following BLAST results are available for this feature:
BLAST of EY728350 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
YTHD3_PONAB3.248e-1739.86YTH domain family protein 3 OS=Pongo abelii GN=YTH... [more]
YTHD3_MOUSE3.248e-1739.86YTH domain family protein 3 OS=Mus musculus GN=Yth... [more]
YTHD3_HUMAN3.248e-1739.86YTH domain family protein 3 OS=Homo sapiens GN=YTH... [more]
YTHD2_MACFA4.242e-1739.72YTH domain family protein 2 OS=Macaca fascicularis... [more]
YTHD2_HUMAN4.242e-1739.72YTH domain family protein 2 OS=Homo sapiens GN=YTH... [more]
YTHD2_BOVIN4.242e-1739.72YTH domain family protein 2 OS=Bos taurus GN=YTHDF... [more]
YTHD1_MOUSE2.750e-1640.43YTH domain family protein 1 OS=Mus musculus GN=Yth... [more]
YTHD1_HUMAN1.782e-1539.01YTH domain family protein 1 OS=Homo sapiens GN=YTH... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-E12-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728350 ID=EY728350; Name=EY728350; organism=Citrus sinensis; type=EST; length=927bp
CACGCGTCCGGGGATGTGAAATTGGAGGATTATGGTCAAATTGGTCAAAA
CCATTGAATGGAAAGAGTTCCTTGCTTCAGTTGTCATCTGCAGCAGCTTC
TCTTACTCCAATTAGGTCACTTGAATTTTCTCGGGATGATTTTGAAATGG
CTTCACAGTGGAGAGGATCATTTTTTGGGTTTGGATCTTGTACAGGCTCC
AGATACAGGGGCTACTCTCATTGTCTAAGTGATCAAGGGTCTGAATATGG
ATGTGTCTCCACTTCTAGTATGGAGATGGATGGTCAGAACTGGCCATCGC
TCACTGAAGCCAGACAAGGAGGAAGATGTAATAACTTCTCATGTAGTTGT
ACTGTCACTCTTGATACTCTAAGTGAGCGCAATAGAGGACCTAGGGCATT
TAAGCCAAAAGTTAGGACAACAGCTTATGGATTTGCTGTTGATAATAGCA
AGAATGGAACCCTTGATGATATTCTTAAAGGGTCTTACAACCAATTGGAT
TTTGTCACCAACTATAAAGTTGCAAAGTTCTTCATCATCAAATCTTATAG
TGAAGATAATGTTCACAAAAGCATAAAGTATGGTCTCTGGGCTAGCACCC
CGAATGGGCACAAAAAGTTGGATGCTGCTTATCGCCAATCCAAGGAGAAC
ATGGGACATGCCCGAACTCTCTGTTGTTTTCGGGTAATGCTAGTGCCCCA
TTTCGTGGGGGTGGGAGAAATGGTAAGGGCCCTTAAACCTTCACCAAAAT
GGTCAACTAATGGGTTGAAGGATAAGTGGTCTGGACAATTCCCCCGCAAA
GTGGCCCATAATGAAAGGAGGTCCCCAGCAGGTCCTCTCCGCACATTATA
CTGCAAAAAAAGCGACCACAGACACGTCACAAATAGTTCAAGAACACCAA
AAAGTGGCATCGGCGCGCGGGTCTGGG
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