EY728345

Overview
NameEY728345
Unique NameEY728345
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728345_ssr803 microsatellite EY728345_ssr803:803..812. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728345 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.423e-27
Identity = 63/118 (53.39%), Postives = 76/118 (64.41%), Query Frame = 2
Query:   11 ELWDDVVAGPQPDRGLGRLRKITTTPLAVKEGGEAESSSGKFQRSLSMXXXXXXXXXXXXXXXXXXXRKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDWLYSGETRSKHH 364
            +LWDD+VAGPQP+RGLG LRK+   PL +K+ GE+           S                    RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW+YSGETRSKHH
Sbjct:    6 KLWDDIVAGPQPERGLGMLRKVPQ-PLNLKDEGES-----------SKITMPTTPTTPVTPTTPISARKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDWMYSGETRSKHH 110          
The following BLAST results are available for this feature:
BLAST of EY728345 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN4.423e-2753.39Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-E06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728345 ID=EY728345; Name=EY728345; organism=Citrus sinensis; type=EST; length=909bp
CCACGCGTCCGAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCCTGATC
GTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAGTCAAA
GAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCCAGAGGTCTCTGTC
AATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTGACGCCGACGACGC
CGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGTGTTTCACCCCGGT
AGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCTTTGACAAGCCCAC
ACATCCTAACTCTCCCACTGTTTATGACTGGCTTTACAGTGGGGAGACTA
GGAGCAAGCATCATCACTGAGTGGATGATACGCTCCAGCGATGTAAATGA
ATGTGATGGGTCACCAACTCACCGGATGAGTTGCCTGTAGTCTGTAAATA
GTGTCGTTTCGTTTTGGATTTCGCAACGTGTCCTTGTCGTTTTGTTAATG
CTATTTGTATTACGTGTCCTTCCTATCTAAAGTTTGGTTTTAAAATGCTG
CTGACTANAAGTAAACTAAAGACTGTGATGTTTTTATATCATATAATTTA
ATAATTGTATGTGATGTGANGATTGCTANNCTGTGGGCGGAAATGAAAGG
TTGCTGGTTTTTGGGTTTAGGACATGTTTTTGATTGTCCTTTTGTAAAAG
CCAAAATCATCCCCTCGTGGACGGTCGTGATGACCATATATGTTTAATAA
TTAAAAAATAGTTTGCTCCCTGGANNNANNNNNNNNNGNNNNNNGNNGNA
GGGCGCGCGCGCCAAAAGGATCCAACTACTTACCCTTGCTTGGAAGNCNA
NCCCCCCCAAGNTGTCCCCAAAATCAATCACGGGCCCTTTTCACCTCCTA
ACGGGAACC
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