EY728333

Overview
NameEY728333
Unique NameEY728333
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length737
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728333_ssr679 microsatellite EY728333_ssr679:679..698. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728333_ssr364 microsatellite EY728333_ssr364:364..375. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728333_ssr412 microsatellite EY728333_ssr412:412..432. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig7126 contig Csv1_Contig7126:369..1093. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 142.51 bits (358), Expect = 2.246e-33
Identity = 68/75 (90.67%), Postives = 73/75 (97.33%), Query Frame = 1
Query:    7 SEISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTS 231
            ++ISKDAK TVQ CVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQKYRE+EGEKT+
Sbjct:   43 AKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYREVEGEKTT 117          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB2_ARATH (Nuclear transcription factor Y subunit B-2 OS=Arabidopsis thaliana GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 136.346 bits (342), Expect = 1.610e-31
Identity = 62/76 (81.58%), Postives = 73/76 (96.05%), Query Frame = 1
Query:    7 SEISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSM 234
            ++ISKDAK T+Q CVSEFISF+TGEASDKCQ+EKRKTINGDDLLWAMTTLGFE+YVEPLKVYLQ++RE+EGE+T +
Sbjct:   49 AKISKDAKETMQECVSEFISFVTGEASDKCQKEKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQRFREIEGERTGL 124          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 222
            +I+KDAK TVQ CVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKYREMEG+
Sbjct:   54 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 124          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 132.494 bits (332), Expect = 2.324e-30
Identity = 62/71 (87.32%), Postives = 67/71 (94.37%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 222
            +I+KDAK TVQ CVSEFISFIT EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYLQKYREMEG+
Sbjct:   61 KIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGD 131          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB7_ARATH (Nuclear transcription factor Y subunit B-7 OS=Arabidopsis thaliana GN=NFYB7 PE=2 SV=1)

HSP 1 Score: 129.413 bits (324), Expect = 1.968e-29
Identity = 60/74 (81.08%), Postives = 68/74 (91.89%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTS 231
            +ISKDAK TVQ CVSEFISF+TGEASDKCQREKRKTINGDD++WA+TTLGFE+YV PLKVYL KYR+ EGEK +
Sbjct:   59 KISKDAKETVQECVSEFISFVTGEASDKCQREKRKTINGDDIIWAITTLGFEDYVAPLKVYLCKYRDTEGEKVN 132          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 127.872 bits (320), Expect = 5.725e-29
Identity = 58/78 (74.36%), Postives = 68/78 (87.18%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMXEG 243
            +I+KDAK T+Q CVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y++PLKVYL +YREMEG+     +G
Sbjct:   52 KIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKG 129          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB8_ARATH (Nuclear transcription factor Y subunit B-8 OS=Arabidopsis thaliana GN=NFYB8 PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.765e-29
Identity = 59/78 (75.64%), Postives = 67/78 (85.90%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGEKTSMXEG 243
            +I+KDAK  VQ CVSEFISF+T EASDKCQREKRKTINGDDLLWAM TLGFE+Y+EPLKVYL +YREMEG+     +G
Sbjct:   53 KIAKDAKEIVQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYMEPLKVYLMRYREMEGDTKGSAKG 130          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 124.405 bits (311), Expect = 6.329e-28
Identity = 56/71 (78.87%), Postives = 65/71 (91.55%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 222
            +I KDAK TVQ CVSEFISFIT EASDKCQ+EKRKT+NGDDLLWAM TLGFE+Y+EPLK+YL +YRE+EG+
Sbjct:   44 KIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGD 114          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.737e-26
Identity = 57/80 (71.25%), Postives = 69/80 (86.25%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE-KTSMXEGE 246
            +I+KDAK T+Q CVSEFISF+T EASDKCQ+EKRKTING+DLL+AM TLGFEEYV+PLK+YL KYRE+ G+ K S   G+
Sbjct:   57 KIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGD 136          
BLAST of EY728333 vs. ExPASy Swiss-Prot
Match: NFYB4_ORYSJ (Nuclear transcription factor Y subunit B-4 OS=Oryza sativa subsp. japonica GN=NFYB4 PE=2 SV=2)

HSP 1 Score: 115.931 bits (289), Expect = 2.251e-25
Identity = 53/71 (74.65%), Postives = 64/71 (90.14%), Query Frame = 1
Query:   10 EISKDAKATVQACVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLQKYREMEGE 222
            +I+KD+K +VQ CVSEFISFIT EASDKC +EKRKTINGDDL+W+M TLGFE+YVEPLK+YL+ YRE EG+
Sbjct:   45 KIAKDSKESVQECVSEFISFITSEASDKCLKEKRKTINGDDLIWSMGTLGFEDYVEPLKLYLRLYRETEGD 115          
The following BLAST results are available for this feature:
BLAST of EY728333 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
NFYB3_ARATH2.246e-3390.67Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB2_ARATH1.610e-3181.58Nuclear transcription factor Y subunit B-2 OS=Arab... [more]
NFYB_MAIZE2.324e-3087.32Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ2.324e-3087.32Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB7_ARATH1.968e-2981.08Nuclear transcription factor Y subunit B-7 OS=Arab... [more]
NFYBA_ARATH5.725e-2974.36Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB8_ARATH9.765e-2975.64Nuclear transcription factor Y subunit B-8 OS=Arab... [more]
NFYB1_ARATH6.329e-2878.87Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB2_ORYSJ7.737e-2671.25Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYB4_ORYSJ2.251e-2574.65Nuclear transcription factor Y subunit B-4 OS=Oryz... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-D06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728333 ID=EY728333; Name=EY728333; organism=Citrus sinensis; type=EST; length=737bp
CACGCGTCCGAGATATCAAAGGACGCTAAAGCGACAGTGCAAGCGTGTGT
GTCGGAGTTTATAAGTTTCATAACTGGCGAAGCTTCTGACAAGTGTCAGC
GCGAGAAGCGGAAGACGATCAACGGTGATGATTTGTTGTGGGCCATGACG
ACTTTAGGCTTCGAAGAGTACGTGGAACCCTTGAAGGTCTATTTGCAAAA
GTATAGGGAGATGGAGGGAGAGAAGACTTCCATGNGGGAGGGAGAAGGAC
GGCGGTGGTAGCGGAGGCGGCGCTGGATCAGCCGGTGGCGGAGCAGCGGC
TGGTGGTGGGGCCAGTGGTGGCGGCGGTGCTGGTGGGGGTTACAATGGAG
GGATGTACGGTGGGATGATGATGATGGGACATCAAGGACACGTTTATGGC
TCTGGTGGATTTCATCATCATCATCATCATCAGATGGGTGCTGGAAAGAG
TGGGTCCCCCGCTGCATCAGCTTCTGCCTCCGCCAGAGGCGGCGGTGGCA
GCAGTGGAGCTATTAGGTCAAGGTAGGTCTATTTTGGAGCATCAGGTTCT
GGGACTTATATAGCTTAATTTAGATAGACCTTAAATTGTTACATCATATT
ATAATTATATATGAACATGATTAGGTAATTCTTNNNNNNNCCTATGTTTA
TTTATGTGAGTTGTGGGTGAAGAATTANATATATATATATATATATATAG
TTTATTACNATTTGCGGGGGGTTGAGANCCAGTGGCC
back to top