EY728332

Overview
NameEY728332
Unique NameEY728332
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length890
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig11731 contig Csv1_Contig11731:1..891. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728332 vs. ExPASy Swiss-Prot
Match: SF3A3_MOUSE (Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf3a3 PE=2 SV=2)

HSP 1 Score: 237.269 bits (604), Expect = 9.129e-62
Identity = 120/251 (47.81%), Postives = 153/251 (60.96%), Query Frame = 1
Query:   37 GSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEIXIIEEAKELWKKIQERXGGXQWRPKLEEEYEDQEGXIYNKKTYTDLQRQRLI 789
            G +RLK  L A GLK GGTL++RA+RLF TK   L+ LD   FAK  + K         ++    KDIA +EA++ +  ++L E  + T +NVQ+KQA                            IYNP  LP+GWDGKPIPYWLYKLHGL   + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +  IE+A  LW K++ +    +W+P  EEEYED  G + NKKTY DL+RQ L+
Sbjct:  259 GLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTK------RDTERNKDIAFLEAQIYEYVEILGEQRQLTHENVQRKQARTGEEREEEEEEQISESESEDEENEI--IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501          
BLAST of EY728332 vs. ExPASy Swiss-Prot
Match: SF3A3_HUMAN (Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF3A3 PE=1 SV=1)

HSP 1 Score: 236.498 bits (602), Expect = 1.557e-61
Identity = 120/251 (47.81%), Postives = 152/251 (60.56%), Query Frame = 1
Query:   37 GSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEIXIIEEAKELWKKIQERXGGXQWRPKLEEEYEDQEGXIYNKKTYTDLQRQRLI 789
            G +RLK  L A GLK GGTL++RA+RLF TK   L+ LD   FAK  + K         ++    KDIA +EA++ +  ++L E    T +NVQ+KQA                            IYNP  LP+GWDGKPIPYWLYKLHGL   + CEICGNY+Y G +AF+RHF EWRH HGMRCLGIPNT +F  +  IE+A  LW K++ +    +W+P  EEEYED  G + NKKTY DL+RQ L+
Sbjct:  259 GLDRLKSALLALGLKCGGTLEERAQRLFSTKGKSLESLDTSLFAKNPKSKGTK------RDTERNKDIAFLEAQIYEYVEILGEQRHLTHENVQRKQARTGEEREEEEEEQISESESEDEENEI--IYNPKNLPLGWDGKPIPYWLYKLHGLNINYNCEICGNYTYRGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAVSLWAKLKLQKASERWQPDTEEEYEDSSGNVVNKKTYEDLKRQGLL 501          
BLAST of EY728332 vs. ExPASy Swiss-Prot
Match: NOI_DROME (Splicing factor 3A subunit 3 OS=Drosophila melanogaster GN=noi PE=1 SV=1)

HSP 1 Score: 216.083 bits (549), Expect = 2.178e-55
Identity = 116/251 (46.22%), Postives = 148/251 (58.96%), Query Frame = 1
Query:   37 GSERLKEELAAKGLKSGGTLQQRAERLFLTKHTPLDKLDKKHFAKGARGKEQNGVAPATQEVGNLKDIALMEAKMKKLCDLLSETIERTIQNVQKKQALXXXXXXXXXXXXXXXXXXXXXXXXXXQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEIXIIEEAKELWKKIQERXGGXQWRPKLEEEYEDQEGXIYNKKTYTDLQRQRLI 789
            G +RLK  L A GLK GGTL++RA+RLF TK      LD    AK    K  +     ++E    K+IA +EA + K  DLLSE    T +NVQ+KQA                             YNP  LP+GWDGKPIPYWLYKLHGL   + CEICGN++Y G +AF+RHF EWRH HGMRCLGIPNT +F  +  IE+A  LW+K++ +    +W    EEE+ED  G + N+KT+ DL+RQ L+
Sbjct:  259 GLDRLKSALVALGLKCGGTLEERAQRLFSTKGK--STLDPALMAKKPSAKTASA---QSREHERHKEIAQLEALLYKYADLLSEQRAATKENVQRKQARTGGERDDSDVEASESDNEDDPDADDVP-YNPKNLPLGWDGKPIPYWLYKLHGLNISYNCEICGNFTYKGPKAFQRHFAEWRHAHGMRCLGIPNTAHFANVTQIEDAITLWEKLKSQKQSERWVADQEEEFEDSLGNVVNRKTFEDLKRQGLL 503          
BLAST of EY728332 vs. ExPASy Swiss-Prot
Match: SAP61_SCHPO (CWF complex protein sap61 OS=Schizosaccharomyces pombe GN=sap61 PE=1 SV=1)

HSP 1 Score: 157.532 bits (397), Expect = 9.192e-38
Identity = 89/231 (38.53%), Postives = 121/231 (52.38%), Query Frame = 1
Query:  154 KKHFAKGARGKEQNGVAPATQEVGNLKD-----IALMEAKMKKLCDLLSETIERTIQNVQKKQALXXXXXXXXXXXXXXXXXXXXXXXXXXQ--------------IYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEIXIIEEAKELWKKIQERXGGXQWRPKLEEEYEDQEGXIYNKKTYTDLQRQRLI 789
            KK  A     K     +P+T    N K      IA +E  +KKL  LL +  + T +NV ++Q L                          +              IYNPLKLP+GWDGKPIP+WL+KLHGLG+EF CEICGNY Y GR+AF++HF E RH +G++CLGI  +  FN+I  I+EA +LW+K +      +       E ED EG + ++K Y DL+ Q L+
Sbjct:  262 KKSKAHNKAVKRMQSSSPSTTSNTNEKQKGPKAIARIEFLIKKLTSLLDDVRKDTRENVVRRQTLTAAERLAEVEAAEREAFEQSTPSVSVEGNQDEESDQDDEEKIYNPLKLPLGWDGKPIPFWLWKLHGLGKEFPCEICGNYVYMGRKAFDKHFTEQRHIYGLKCLGISPSPLFNQITSIDEALQLWQKYKVDSKKRETTMASLNEMEDDEGNVMSEKVYNDLKAQGLL 492          
BLAST of EY728332 vs. ExPASy Swiss-Prot
Match: PRP9_YEAST (Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cerevisiae GN=PRP9 PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 4.280e-27
Identity = 61/133 (45.86%), Postives = 82/133 (61.65%), Query Frame = 1
Query:  433 LPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEIXIIEEAKELWKKIQ--------------ERXGGXQWRPKLEEEYEDQEGXIYNKKTYTDLQRQRLI 789
            +P+G DG P+PYWLYKLHGL +E++CEIC N  Y GRR FERHF E RH + +RCLGI  +  F  I  I+EA+ELWK +Q                    +   +LE E ED+EG + +KK Y +L++Q L+
Sbjct:  398 MPLGPDGLPMPYWLYKLHGLDREYRCEICSNKVYNGRRTFERHFNEERHIYHLRCLGIEPSSVFKGITKIKEAQELWKNMQGQSQLTSIAAVPPKPNPSQLKVPTELELEEEDEEGNVMSKKVYDELKKQGLV 530          
The following BLAST results are available for this feature:
BLAST of EY728332 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
SF3A3_MOUSE9.129e-6247.81Splicing factor 3A subunit 3 OS=Mus musculus GN=Sf... [more]
SF3A3_HUMAN1.557e-6147.81Splicing factor 3A subunit 3 OS=Homo sapiens GN=SF... [more]
NOI_DROME2.178e-5546.22Splicing factor 3A subunit 3 OS=Drosophila melanog... [more]
SAP61_SCHPO9.192e-3838.53CWF complex protein sap61 OS=Schizosaccharomyces p... [more]
PRP9_YEAST4.280e-2745.86Pre-mRNA-splicing factor PRP9 OS=Saccharomyces cer... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-D05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728332 ID=EY728332; Name=EY728332; organism=Citrus sinensis; type=EST; length=890bp
CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGGTTCTGAAAGGTT
AAAGGAGGAATTGGCTGCAAAAGGACTAAAGAGTGGTGGCACCTTGCAGC
AACGTGCAGAGAGGCTTTTCCTTACAAAGCACACTCCTCTAGACAAGTTG
GACAAGAAACATTTTGCGAAGGGCGCACGTGGAAAGGAACAAAATGGAGT
GGCTCCAGCAACCCAAGAAGTTGGCAATTTAAAAGACATTGCCCTGATGG
AGGCTAAAATGAAAAAACTTTGTGACTTACTTAGTGAGACAATTGAGCGA
ACAATACAGAATGTCCAGAAGAAACAGGCACTGACTTATGAGGAAATGGA
AGCAGAACGAGAAGAACAGGAGGAGACACAAGTTGACACTGAAAGTGACG
ATGAAGAGCAGCAGATTTACAATCCCCTCAAATTGCCAATGGGTTGGGAT
GGGAAGCCTATACCCTACTGGCTATACAAGCTTCATGGTCTTGGTCAGGA
GTTTAAGTGTGAGATATGCGGAAACTACAGCTATTGGGGCCGTAGGGCGT
TTGAGCGGCATTTTAAGGAATGGCGCCATCAGCATGGGATGCGTTGCCTT
GGTATTCCAAACACCAAAAACTTCAATGAGATCNACATCATTGAGGAAGC
CAAAGAACTGTGGAAGAAGATACAAGAAAGGCANGGAGGGATNCAGTGGC
GCCCAAAGCTTGAAGAAGAATATGAAGACCAAGAGGGTANCATCTACAAT
AAGAAAACATATACCGACTTGCAGCGCCAAAGACTGATTTAAAAAATTAG
TGGTTATCTTGGAGAACCATTACGGGGCTCGACTTTCATTTCACCATGGC
TTGAGAACTTGCTGAGATCCAAATGGAGGCAGGGCTCAAC
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