EY728327

Overview
NameEY728327
Unique NameEY728327
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length906
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728327_ssr827 microsatellite EY728327_ssr827:827..836. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728327_ssr576 microsatellite EY728327_ssr576:576..595. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728327 vs. ExPASy Swiss-Prot
Match: 12KD_FRAAN (Auxin-repressed 12.5 kDa protein OS=Fragaria ananassa PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.384e-11
Identity = 30/40 (75.00%), Postives = 35/40 (87.50%), Query Frame = 2
Query:  425 RKDNVWRSVFHPGSNLATRGIGAEVFDKPTHPNSPTVYDW 544
            RKDNVWRSVFHPGSNL+++ +G +VFD P  PNSPTVYDW
Sbjct:   61 RKDNVWRSVFHPGSNLSSKTMGNQVFDSP-QPNSPTVYDW 99          
The following BLAST results are available for this feature:
BLAST of EY728327 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
12KD_FRAAN3.384e-1175.00Auxin-repressed 12.5 kDa protein OS=Fragaria anana... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C11-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728327 ID=EY728327; Name=EY728327; organism=Citrus sinensis; type=EST; length=906bp
CCACGCGTCCGCGGACGCGTGGGTTAGAAACTAGCAGCTAAATTGTAAAT
TTAAAGATGCTAGAGAAGCTTTGGGACGATGTTGTGGCAGGGCCTCAGCC
TGATCGTGGCCTTGGCAGGCTGAGGAAAATCACCACAACACCCTTAGCAG
TCAAAGGTAGTTTTTTTTTTTTTTTTTTTTTTTTTTGTTCTTCTTAAAAA
TATCTCATTTATTGTTATATTTCAGTATCTTCTTCTCCAAAGATTATGAA
AAAATATATATAAGTTTTTTTCTCAGTTTTTTAATTATGTGTGATTCTTA
TTGTTATTGGGTAAAGGGTGGTGAGGCGGAGTCGTCGTCGGGCAAGTTCC
AGAGGTCTCTGTCAATGCCAGCGAGTCCAGGGGCACCGTCGACGCCAGTG
ACGCCGACGACGCCGCTGTCGGCGCGTAAGGACAACGTGTGGAGGAGCGT
GTTTCACCCCGGTAGCAACCTTGCTACTAGGGGTATCGGTGCAGAGGTCT
TTGACAAGCCCACACATCCTAACTCTCCCACTGTTTATGACTGGTAAGTA
CGTGCGTGTGTGCTCANTCACTCAATCGCTCGCTCGCTCGCTCGCTCTTC
ACTTGCATAAATGCTGCATGCTTGTTCTAACTTATGATTCTTTCTTTAGA
CCCTTATCAGTTGAAAGCAAAGGCGAATTGTACTCTATCTATATATGTTT
AATCATGGTTCGGTGGCGGAAAAAAGAAAGTGGAGTGATTAAGGGGGGGC
CCTTTTCCCCCCCCCGGTNGTAAAAATGGATTTATGCCCGAATCGAAAAA
AAACGGGGNGAAGAAATGACGGGTGCGTGTGTGTGTTGTGAGACGAAAAT
GATGAACCATTCGANGGGCNGCAGCGAGAGCCCGGGGGGGGCGGGCGCCG
TGGCGG
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