EY728318

Overview
NameEY728318
Unique NameEY728318
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM2_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 2 OS=Arabidopsis thaliana GN=At3g02320 PE=2 SV=3)

HSP 1 Score: 139.043 bits (349), Expect = 2.179e-59
Identity = 69/83 (83.13%), Postives = 73/83 (87.95%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGEV 628
            SVEAC+RNIKFNGSVA SKVESH  DARV+MLTHPKEFDVVDLDPYGSPS  LDSAIQSV DG +L CTATD+AVL GG GEV
Sbjct:  157 SVEACQRNIKFNGSVAISKVESHHTDARVHMLTHPKEFDVVDLDPYGSPSIFLDSAIQSVTDGGLLMCTATDMAVLCGGNGEV 239          

HSP 2 Score: 112.079 bits (279), Expect = 2.179e-59
Identity = 66/123 (53.66%), Postives = 75/123 (60.98%), Query Frame = 1
Query:   88 EVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKD--------------------------------EEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDND 360
            +VNNRD+SIAV+R F+SKR QEHEA  SKRT  A K  EKD                                ++  K TER   R+ KPP+VLEALSASGLRALRYARE+EGIGQVVALDND
Sbjct:   32 QVNNRDMSIAVLREFLSKRKQEHEAKSSKRTRPASKVIEKDASEASKEETPSENGMNNGDHEVASEDGPSSVSKDPAKTTERFAPREPKPPKVLEALSASGLRALRYAREIEGIGQVVALDND 154          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_ARATH (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase 1 OS=Arabidopsis thaliana GN=At5g15810 PE=2 SV=3)

HSP 1 Score: 132.109 bits (331), Expect = 3.705e-59
Identity = 63/83 (75.90%), Postives = 73/83 (87.95%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGEV 628
            SVEAC+RNIKFNG ++ SKVESHL DARV+ML+HPK+FDVVDLDPYG+PS  LDSA+QSVADG +L CTATD+AVL G  GEV
Sbjct:  157 SVEACQRNIKFNGLMSTSKVESHLTDARVHMLSHPKDFDVVDLDPYGAPSIFLDSAVQSVADGGLLMCTATDMAVLCGANGEV 239          

HSP 2 Score: 118.242 bits (295), Expect = 3.705e-59
Identity = 70/123 (56.91%), Postives = 77/123 (62.60%), Query Frame = 1
Query:   88 EVNNRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKD--------------------------------EEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALDND 360
            +VNNRD+SIAV+RAFI KR QEHEAMLSKR  S+ K  EKD                                +EA K    +  R+LKPPRVLEALSASGLRALRYAREVEGIGQVVALDND
Sbjct:   32 QVNNRDMSIAVLRAFIIKRKQEHEAMLSKRARSSGKVVEKDVSETSKEETPTENGDDNGKTNGEHEVTTQDGPKEAAKTAYESARRELKPPRVLEALSASGLRALRYAREVEGIGQVVALDND 154          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_MOUSE (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Mus musculus GN=Trmt1 PE=1 SV=2)

HSP 1 Score: 80.8777 bits (198), Expect = 4.072e-20
Identity = 42/85 (49.41%), Postives = 57/85 (67.06%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGE 625
            +VE   RN++ NG      V+ + ADAR+ M  H   P+ FDV+DLDPYGSP+  LD+A+Q+V+DG +L  T TD+AVL G  GE
Sbjct:  188 AVELMHRNVELNG--VAHLVQPNQADARMLMYQHQKAPERFDVIDLDPYGSPAPFLDAAVQAVSDGGLLCVTCTDMAVLAGNSGE 270          

HSP 2 Score: 38.5058 bits (88), Expect = 4.072e-20
Identity = 19/30 (63.33%), Postives = 24/30 (80.00%), Query Frame = 1
Query:  265 RVLEALSASGLRALRYAREVEGIGQVVALD 354
            RVLE L+ASGLR++R+A EV G+  VVA D
Sbjct:  154 RVLEGLAASGLRSIRFALEVPGLQSVVAND 183          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_CAEEL (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Caenorhabditis elegans GN=trm-1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 2.574e-19
Identity = 39/85 (45.88%), Postives = 50/85 (58.82%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTH---PKEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGE 625
            +V + + N+K NG      VE+H  DA + M+ H    K F  VDLDPYG+ S  LDSA+Q VAD  +L  T TD+AVL G   E
Sbjct:  127 AVASIQENVKLNGVEDI--VEAHFGDAVMTMMEHRGIDKRFHAVDLDPYGTASTFLDSAVQCVADRGILMVTCTDMAVLCGNTPE 209          

HSP 2 Score: 50.447 bits (119), Expect = 2.574e-19
Identity = 29/86 (33.72%), Postives = 51/86 (59.30%), Query Frame = 1
Query:   97 NRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDEEAVKPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALD 354
            NRD+++ V+R F    + +H+    ++     K  + +EE  K   +  + +    R+L+ALSASGLRALR+++EV  +G ++A D
Sbjct:   46 NRDLTVTVLRQF----SADHQKWAEEQ-----KQLKTEEEPPKKKNKLAINEDGKIRILDALSASGLRALRFSKEVPNVGFIMAND 122          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_HUMAN (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Homo sapiens GN=TRMT1 PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 9.528e-19
Identity = 39/85 (45.88%), Postives = 55/85 (64.71%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHPK---EFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGE 625
            +V+  RRN++ N       V+   ADAR+ M  H +    FDV+DLDPYGSP+  LD+A+Q+V++G +L  T TD+AVL G  GE
Sbjct:  189 AVDLIRRNVQLND--VAHLVQPSQADARMLMYQHQRVSERFDVIDLDPYGSPATFLDAAVQAVSEGGLLCVTCTDMAVLAGNSGE 271          

HSP 2 Score: 40.4318 bits (93), Expect = 9.528e-19
Identity = 35/104 (33.65%), Postives = 50/104 (48.08%), Query Frame = 1
Query:   97 NRDISIAVMRAF----ISKRNQEHEAMLSKRTTSAP-KASEKDEEAVKPTERNVLRQLKPPR-------------VLEALSASGLRALRYAREVEGIGQVVALD 354
            NRD++ AV+  F    +  +  + +    K T       SE++EE V+  E   L     PR             VLE L+ASGLR++R+A EV G+  VVA D
Sbjct:   81 NRDLTCAVITEFARIQLGAKGIQIKVPGEKDTQKVVVDLSEQEEEKVELKESENLASGDQPRTAAVGEICEEGLHVLEGLAASGLRSIRFALEVPGLRSVVAND 184          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_DROME (Probable N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Drosophila melanogaster GN=CG6388 PE=2 SV=1)

HSP 1 Score: 60.4622 bits (145), Expect = 1.242e-18
Identity = 35/83 (42.17%), Postives = 46/83 (55.42%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHP-KEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGE 625
            +V +   NI+ N      +     A   +Y+ T P K FD VDLDPYG P+  LD A+Q + DG +L  TATD+AVL G   E
Sbjct:  136 AVASINTNIRHNKVEELIEPSHSDAMTLMYLSTQPEKRFDAVDLDPYGCPNRFLDGAMQCLVDGGLLLVTATDMAVLAGNAPE 218          

HSP 2 Score: 53.9138 bits (128), Expect = 1.242e-18
Identity = 31/90 (34.44%), Postives = 49/90 (54.44%), Query Frame = 1
Query:   97 NRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDEEAVKPTERNVL----RQLKPPRVLEALSASGLRALRYAREVEGIGQVVALD 354
            NRD+SIA +  +  +  +E      K+     K  E ++    P +  V     R     R+LEAL+A+GLR++RYA+E+ G+ Q+VA D
Sbjct:   42 NRDLSIAALNVYRQRLTKERSEKALKKQRKKVKEQEDEKTTPVPEDPPVYEAGTRYEDGLRILEALAATGLRSIRYAQEIAGVRQIVAND 131          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_YEAST (N(2),N(2)-dimethylguanosine tRNA methyltransferase, mitochondrial OS=Saccharomyces cerevisiae GN=TRM1 PE=1 SV=1)

HSP 1 Score: 58.151 bits (139), Expect = 3.247e-15
Identity = 31/81 (38.27%), Postives = 53/81 (65.43%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHP---KEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDG 613
            +VE+ +RN+++N     + V+ +L DA V M  +     +F V+DLDPYG+ +  +D+AIQS+ +G ++  T TD++VL G
Sbjct:  169 AVESIKRNVEYNSVE--NIVKPNLDDANVLMYRNKATNNKFHVIDLDPYGTVTPFVDAAIQSIEEGGLMLVTCTDLSVLAG 247          

HSP 2 Score: 44.669 bits (104), Expect = 3.247e-15
Identity = 29/96 (30.21%), Postives = 52/96 (54.17%), Query Frame = 1
Query:   97 NRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDEEAVK--------PTER--NVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALD 354
            NRD+S+  ++A+ +   +E     + + +   + +E ++++ K        P E   N  R      +LEALSA+GLRA+RYA E+  + +V+A D
Sbjct:   69 NRDLSVTCIKAWDNLYGEECGQKRNNKKSKKKRCAETNDDSSKRQKMGNGSPKEAVGNSNRNEPYINILEALSATGLRAIRYAHEIPHVREVIAND 164          
BLAST of EY728318 vs. ExPASy Swiss-Prot
Match: TRM1_SCHPO (N(2),N(2)-dimethylguanosine tRNA methyltransferase OS=Schizosaccharomyces pombe GN=trm1 PE=1 SV=1)

HSP 1 Score: 54.6842 bits (130), Expect = 1.269e-13
Identity = 34/95 (35.79%), Postives = 49/95 (51.58%), Query Frame = 2
Query:  380 SVEACRRNIKFNGSVACSKVESHLADARVYMLTHPKEFDVVDLDPYGSPSACLDSAIQSVADGSMLKCTATDIAVLDGGEGEVALPNRFLSRRRG 664
            +V+   +N+ +N       V  +  DA   M  +   +DV+DLDPYGS +  LD+A+QSV+   +L  T TD AVL G     A P +  S   G
Sbjct:  160 AVKTIEKNVNYNN--VSDIVIPNKGDANAVMHMNKFHYDVIDLDPYGSAAPFLDAAVQSVSKDGLLCITCTDSAVLAGN----AYPEKCFSNYGG 248          

HSP 2 Score: 42.743 bits (99), Expect = 1.269e-13
Identity = 28/100 (28.00%), Postives = 51/100 (51.00%), Query Frame = 1
Query:   97 NRDISIAVMRAFISKRNQEHEAMLSKRTTSAPKASEKDEEAV--------------KPTERNVLRQLKPPRVLEALSASGLRALRYAREVEGIGQVVALD 354
            NRD+S+  +RA+   R+++  A    R     + SE  +E +              + T+      +    +LEALSA+GLR++RYA+E+  + +++A D
Sbjct:   56 NRDLSVTAIRAWSETRSKKIVAKSHHRHQLLDQNSELSQENLTKCDTTHDFEKNCSEKTDSTSADNIAGFTILEALSATGLRSIRYAKELPNVKRILAND 155          
The following BLAST results are available for this feature:
BLAST of EY728318 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
TRM2_ARATH2.179e-5983.13Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_ARATH3.705e-5975.90Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_MOUSE4.072e-2049.41N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_CAEEL2.574e-1945.88N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_HUMAN9.528e-1945.88N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_DROME1.242e-1842.17Probable N(2),N(2)-dimethylguanosine tRNA methyltr... [more]
TRM1_YEAST3.247e-1538.27N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
TRM1_SCHPO1.269e-1335.79N(2),N(2)-dimethylguanosine tRNA methyltransferase... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-C02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728318 ID=EY728318; Name=EY728318; organism=Citrus sinensis; type=EST; length=812bp
CACGCGTCCGAAATTATTGATTTTGTTGTAATGTTTAATTTTTTTTTTTT
TCGGTAGGTTTGTGCTTAACGTTGTGTTTTCTAATTGGAGGTTAACAACA
GGGACATATCAATTGCTGTCATGAGGGCATTTATATCTAAACGCAATCAG
GAGCATGAAGCAATGTTGTCTAAAAGAACAACATCTGCTCCAAAGGCGTC
AGAGAAGGATGAAGAAGCAGTCAAGCCCACTGAGAGAAATGTGCTAAGGC
AACTGAAGCCACCAAGAGTTCTTGAGGCCTTATCAGCTTCTGGGTTAAGA
GCTCTAAGATATGCTCGTGAAGTAGAAGGAATTGGTCAAGTTGTGGCCTT
AGACAATGATAAAGGTCGCTATCAATCCTTCAGTTGAAGCTTGCAGGAGA
AATATAAAGTTCAATGGTTCAGTGGCATGTTCAAAGGTGGAGTCACATCT
TGCAGATGCTCGTGTATATATGCTTACCCATCCCAAAGAATTTGATGTGG
TGGATCTTGATCCTTATGGGTCTCCTTCCGCGTGTCTGGACTCTGCTATT
CAATCCGTGGCTGATGGAAGCATGTTGAAGTGTACAGCGACAGACATAGC
TGTGCTTGATGGGGGAGAGGGGGAGGTCGCACTGCCAAACCGCTTCCTCT
CCCGACGGCGCGGACTAGCCCCAGCCACCGCCGCGAGCGGTGTCCGGCGG
GCTGAGCGAGCGAGGCGCTCGGCGCGGCCCAGCGCGGACCCGGACCGCCT
GGCCGCCGGGGCAGCGCCCCGCCGCAGCCGGCGGGCGCGCGGGGGAGCGC
CCCGTCAACGTC
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