EY728310

Overview
NameEY728310
Unique NameEY728310
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728310_ssr84 microsatellite EY728310_ssr84:84..95. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11728 contig Csv1_Contig11728:1..879. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728310 vs. ExPASy Swiss-Prot
Match: K6PF5_ARATH (6-phosphofructokinase 5, chloroplastic OS=Arabidopsis thaliana GN=PFK5 PE=1 SV=1)

HSP 1 Score: 201.445 bits (511), Expect = 5.397e-51
Identity = 110/228 (48.25%), Postives = 148/228 (64.91%), Query Frame = 2 
Query:  209 MEALSHTVGPTVA-PLRPKRPLRWNWNGFSSVLVQSKKN--HPSGICRSA--ADEISQS-ARASGLDFNDPDWKSKFQSDFEKRFSLPHITDIFRDATPIPSTFCLRMRTPVTEDFADGYPSDEKWHGYINNNDRVLLKVINFSSPTSAGAECIDRDCTWVEQWVHRAGAREEIXXXXXXXXXNCYLWWTMSWSQ*CDQTYCHYS*NIW-CKNIVGIPFGYRGFCEQN 871
            M+ALS  +   ++ P +         +G +S++++  ++  +PS   R +  A EI  S   AS +D +DPDWK K++ DFE+RFS+PHITD+  DA  I STFCL+MR+P TEDF  GYPSDE+WHGYINNNDRVLLKVI++SSPTSAGAEC+D DC+WVEQW+HRAG RE+I                +         +   +  I+  KNIVGIPFGYRGF +++
Sbjct:    1 MDALSQAISSGISVPYKNNSSSLVPSHGLTSLILRKSRSPVNPSSRSRVSVRASEIQHSKTSASSIDLSDPDWKLKYEKDFEQRFSIPHITDVLPDAEAIRSTFCLKMRSP-TEDFVGGYPSDEEWHGYINNNDRVLLKVISYSSPTSAGAECLDHDCSWVEQWIHRAGPREKIYFRPEEVKAAIITCGGLCPGLNDVIRHIVITLEIYGVKNIVGIPFGYRGFSDKD 227
The following BLAST results are available for this feature:
BLAST of EY728310 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
K6PF5_ARATH5.397e-5148.256-phosphofructokinase 5, chloroplastic OS=Arabidop... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-B04-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728310 ID=EY728310; Name=EY728310; organism=Citrus sinensis; type=EST; length=876bp
CCACGCGTCCGGTTTTACCAGTCGAAGTGTACAGTGAATCATTTAATGCA
GCCGTCCGCTTTGTATAATTTGTTTGCCAATGTCACCCACCCACCCCCCT
GCTCACTGAACACTCAACAATAAACACAATAAACTAATTGATTGTCTTCG
ATCATTCATTCAGAGACGGAGTGACATTGTCCGAACCAAAACTGATCGTT
TTACTTCGATGGAAGCTCTCTCTCATACGGTCGGTCCTACGGTCGCTCCT
CTCCGCCCAAAGCGTCCTCTTCGGTGGAATTGGAATGGATTCAGTTCCGT
GCTCGTCCAATCGAAGAAGAATCACCCGAGTGGAATTTGTAGGAGCGCTG
CTGATGAGATTAGTCAAAGTGCTCGCGCTTCGGGCCTCGATTTCAACGAC
CCCGATTGGAAGTCAAAATTCCAGAGTGATTTCGAGAAGCGCTTTAGCCT
TCCTCACATCACCGATATTTTCAGAGATGCCACGCCTATTCCTTCCACCT
TTTGTCTTAGGATGAGGACTCCCGTGACTGAAGATTTCGCGGATGGCTAC
CCTTCTGATGAGAAGTGGCACGGGTATATTAACAATAATGACAGAGTGCT
TCTTAAGGTCATAAATTTCTCATCACCCACATCTGCTGGTGCTGAGTGTA
TCGATCGTGATTGTACTTGGGTCGAACAATGGGTTCATCGTGCTGGGGCT
CGGGAGGAAATATCTTCAAGCCGGAAGAAGTAAAGCAGCAATTGTTACTT
GTGGTGGACTATGTCCTGGTCTCAATGATGTGATCAAACATATTGTCATT
ACTCTTGAAATATATGGTGTAAAAATATAGTAGGGATCCCATTTGGTTAT
CGTGGATTTTGTGAACAAAATTGACT
back to top