EY728299

Overview
NameEY728299
Unique NameEY728299
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length801
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_PEA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Pisum sativum PE=1 SV=1)

HSP 1 Score: 313.538 bits (802), Expect = 3.698e-85
Identity = 144/190 (75.79%), Postives = 167/190 (87.89%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +E+KVGDKIE VRF HC+KRGVDRVFVDHP FL +VWGKT SK+YGP+TG DY+DNQLRFSLLCQAALE PR+LNLNS++YFSGPYGEDV+FVANDWH++LIPCYLK+MYK +G+YK+A+V  CIHNIAYQGR AF DF LLNLP  F+SSFDFIDGYNKP  G+KI WM AGILESD V + SP YA++
Sbjct:  133 VEVKVGDKIETVRFFHCYKRGVDRVFVDHPLFLERVWGKTGSKLYGPKTGIDYRDNQLRFSLLCQAALEAPRVLNLNSSKYFSGPYGEDVIFVANDWHSALIPCYLKSMYKSRGLYKNAKVAFCIHNIAYQGRNAFSDFSLLNLPDEFRSSFDFIDGYNKPCEGKKINWMKAGILESDQVFTVSPHYAKE 322          

HSP 2 Score: 23.8682 bits (50), Expect = 3.698e-85
Identity = 9/21 (42.86%), Postives = 14/21 (66.67%), Query Frame = 1
Query:  553 PSICPRPVSGEHQGIELDDIL 615
            P      +SGE +G+ELD+I+
Sbjct:  317 PHYAKELISGEDRGVELDNII 337          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_ANTMA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Antirrhinum majus GN=WAXY PE=2 SV=1)

HSP 1 Score: 307.76 bits (787), Expect = 4.633e-83
Identity = 145/190 (76.32%), Postives = 159/190 (83.68%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +E+KVGD IE VRF HC+KRGVDRVFVDHP FL KVWGKT+SKIYGP  G DYQDNQLRFSLLCQAALE PR+LNL S++YFSGPYGEDVVFVANDWHT+L+PCYLK+MY+ KGMY  A+V  CIHNIAYQGRF   DF LLNLP  FKSSFDF DGY KPV GRKI WM AGILESD V + SP YA +
Sbjct:  138 VEIKVGDSIETVRFFHCYKRGVDRVFVDHPIFLEKVWGKTKSKIYGPNAGTDYQDNQLRFSLLCQAALEAPRVLNLTSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSKGMYLHAKVAFCIHNIAYQGRFGSSDFCLLNLPDQFKSSFDFFDGYEKPVKGRKINWMKAGILESDRVVTVSPYYAME 327          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_IPOBA (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Ipomoea batatas GN=WAXY PE=2 SV=2)

HSP 1 Score: 304.294 bits (778), Expect = 5.123e-82
Identity = 140/190 (73.68%), Postives = 163/190 (85.79%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +EL+VGD+IE VRF H +KRGVDRVFVDHP FL KVWGKT S +YGP+ G+DY+DNQLRFSLLCQAALE PR+LNLNS+ YFSGPYGEDVVFVANDWHT+L+PCYLKTMY+ +G+Y +A+V  CIHNIAYQGRFAF DF LLNLP  +K SFDFIDGY+KPV GRKI WM AGI E+D V + SP YA++
Sbjct:  138 VELQVGDRIEPVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSMLYGPKAGKDYKDNQLRFSLLCQAALEAPRVLNLNSSNYFSGPYGEDVVFVANDWHTALLPCYLKTMYQSRGIYMNAKVAFCIHNIAYQGRFAFSDFSLLNLPDEYKGSFDFIDGYDKPVKGRKINWMKAGIREADRVFTVSPNYAKE 327          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_ARATH (Probable granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Arabidopsis thaliana GN=WAXY PE=2 SV=1)

HSP 1 Score: 304.294 bits (778), Expect = 5.123e-82
Identity = 142/190 (74.74%), Postives = 165/190 (86.84%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +++KVGDK+E VRF HC+KRGVDRVFVDHP FLAKV GKT SKIYGP TG DY DNQLRFSLLCQAALE P++LNLNS++YFSGPYGEDVVFVANDWHT+L+PCYLK+MY+ +G+Y +A+VV CIHNIAYQGRFAF+D+ LLNLP  FKSSFDF+DGY KPV GRKI WM A ILE+  V + SP YAQ+
Sbjct:  140 VQIKVGDKVENVRFFHCYKRGVDRVFVDHPIFLAKVVGKTGSKIYGPITGVDYNDNQLRFSLLCQAALEAPQVLNLNSSKYFSGPYGEDVVFVANDWHTALLPCYLKSMYQSRGVYMNAKVVFCIHNIAYQGRFAFDDYSLLNLPISFKSSFDFMDGYEKPVKGRKINWMKAAILEAHRVLTVSPYYAQE 329          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_MANES (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Manihot esculenta GN=WAXY PE=2 SV=1)

HSP 1 Score: 303.523 bits (776), Expect = 8.738e-82
Identity = 142/190 (74.74%), Postives = 160/190 (84.21%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +E+K+GD+IE VRF H +KRGVDRVFVDHP FL KVWGKT SKIYGPR G DYQDNQLRFSLLC AALE PR+LNLNS++ FSGPYGE+V F+ANDWHT+L+PCYLK +Y+P G+YK A+V  CIHNIAYQGRFAF DF  LNLP  FKSSFDFIDGY KPV GRKI WM AGILESD V + SP YAQ+
Sbjct:  138 VEIKIGDRIETVRFFHSYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPRAGLDYQDNQLRFSLLCLAALEAPRVLNLNSSKNFSGPYGEEVAFIANDWHTALLPCYLKAIYQPMGIYKHAKVAFCIHNIAYQGRFAFSDFPRLNLPDKFKSSFDFIDGYEKPVKGRKINWMKAGILESDRVLTVSPYYAQE 327          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_SOLTU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Solanum tuberosum GN=WAXY PE=1 SV=1)

HSP 1 Score: 302.368 bits (773), Expect = 1.947e-81
Identity = 140/190 (73.68%), Postives = 161/190 (84.74%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +E+KVGD IE VRF HC+KRGVDRVFVDHP FL KVWGKT SKIYGP+ G DY DN+LRFSLLCQAALE P++LNLNS+ YFSGPYGEDV+F+ANDWHT+LIPCYLK+MY+ +G+Y +A+V  CIHNIAYQGRF+F DF LLNLP  F+ SFDFIDGY KPV GRKI WM AGILES  V + SP YAQ+
Sbjct:  137 VEVKVGDSIEIVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKIYGPKAGLDYLDNELRFSLLCQAALEAPKVLNLNSSNYFSGPYGEDVLFIANDWHTALIPCYLKSMYQSRGIYLNAKVAFCIHNIAYQGRFSFSDFPLLNLPDEFRGSFDFIDGYEKPVKGRKINWMKAGILESHRVVTVSPYYAQE 326          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_HORVU (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Hordeum vulgare GN=WAXY PE=1 SV=1)

HSP 1 Score: 293.893 bits (751), Expect = 6.923e-79
Identity = 134/189 (70.90%), Postives = 158/189 (83.60%), Query Frame = 2
Query:    5 ELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            E+KV D+ E+VRF HC+KRGVDRVF+DHPWFL KV GKT+ KIYGP  G DY+DNQ RFSLLCQAALE PRILNLN+N YFSGPYGEDVVFV NDWHT L+ CYLK+ Y+  G+Y++A+V  CIHNI+YQGRF+F+DF  LNLP  FKSSFDFIDGY+KPV GRKI WM AGIL++D V + SP YA++
Sbjct:  133 EIKVADEYERVRFFHCYKRGVDRVFIDHPWFLEKVRGKTKEKIYGPDAGTDYEDNQQRFSLLCQAALEAPRILNLNNNPYFSGPYGEDVVFVCNDWHTGLLACYLKSNYQSNGIYRTAKVAFCIHNISYQGRFSFDDFAQLNLPDRFKSSFDFIDGYDKPVEGRKINWMKAGILQADKVLTVSPYYAEE 321          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_SORBI (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Sorghum bicolor GN=WAXY PE=2 SV=1)

HSP 1 Score: 288.886 bits (738), Expect = 2.227e-77
Identity = 134/189 (70.90%), Postives = 153/189 (80.95%), Query Frame = 2
Query:    5 ELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            E+K+GD  E VRF HC+KRGVDRVF+DHP FL +VWGKT+ KIYGP  G DY+DNQLRFSLLCQAALE PRIL+LN+N YFSGPYGEDVVFV NDWHT  + CYLK+ Y+  G+YK A+   CIHNI+YQGRFAF DF  LNLP  FKSSFDFIDGY KPV GRKI WM AGILE+D V + SP YA++
Sbjct:  139 EIKMGDGYETVRFFHCYKRGVDRVFIDHPLFLERVWGKTEEKIYGPDAGTDYKDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSNGIYKDAKTAFCIHNISYQGRFAFSDFPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEE 327          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1_MAIZE (Granule-bound starch synthase 1, chloroplastic/amyloplastic OS=Zea mays GN=WAXY PE=3 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.444e-76
Identity = 133/189 (70.37%), Postives = 153/189 (80.95%), Query Frame = 2
Query:    5 ELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            E+K+GD  E VRF HC+KRGVDRVFVDHP FL +VWGKT+ KIYGP  G DY+DNQLRFSLLCQAALE PRIL+LN+N YFSGPYGEDVVFV NDWHT  + CYLK+ Y+  G+Y+ A+   CIHNI+YQGRFAF D+  LNLP  FKSSFDFIDGY KPV GRKI WM AGILE+D V + SP YA++
Sbjct:  134 EIKMGDGYETVRFFHCYKRGVDRVFVDHPLFLERVWGKTEEKIYGPVAGTDYRDNQLRFSLLCQAALEAPRILSLNNNPYFSGPYGEDVVFVCNDWHTGPLSCYLKSNYQSHGIYRDAKTAFCIHNISYQGRFAFSDYPELNLPERFKSSFDFIDGYEKPVEGRKINWMKAGILEADRVLTVSPYYAEE 322          
BLAST of EY728299 vs. ExPASy Swiss-Prot
Match: SSG1B_HORVU (Granule-bound starch synthase 1b, chloroplastic/amyloplastic (Fragment) OS=Hordeum vulgare PE=1 SV=1)

HSP 1 Score: 286.189 bits (731), Expect = 1.444e-76
Identity = 131/190 (68.95%), Postives = 157/190 (82.63%), Query Frame = 2
Query:    2 IELKVGDKIEKVRFLHCHKRGVDRVFVDHPWFLAKVWGKTQSKIYGPRTGEDYQDNQLRFSLLCQAALEPPRILNLNSNEYFSGPYGEDVVFVANDWHTSLIPCYLKTMYKPKGMYKSARVVICIHNIAYQGRFAFEDFGLLNLPTHFKSSFDFIDGYNKPVIGRKICWMIAGILESDMV*SGSPAYAQD 571
            +E+ VGD+ E VRF HC+KRGVDRVFVDHP FL KVWGKT SK+YGP TG D++DNQLRF LLC AALE PR+LNLN++EYFSGPYGE+VVFVANDWHT+++PCYLK+MYK  G+Y++A+V  CIHNIAYQGRF   DF LLNLP  F  SFDF+DG+ KPV+GRKI WM AGI E D+V + SP Y ++
Sbjct:   94 VEVIVGDRTETVRFFHCYKRGVDRVFVDHPMFLEKVWGKTGSKLYGPTTGTDFRDNQLRFCLLCLAALEAPRVLNLNNSEYFSGPYGENVVFVANDWHTAVLPCYLKSMYKQNGIYENAKVAFCIHNIAYQGRFPRADFELLNLPESFMPSFDFVDGHVKPVVGRKINWMKAGITECDVVLTVSPHYVKE 283          
The following BLAST results are available for this feature:
BLAST of EY728299 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 32
Match NameE-valueIdentityDescription
SSG1_PEA3.698e-8575.79Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ANTMA4.633e-8376.32Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_IPOBA5.123e-8273.68Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_ARATH5.123e-8274.74Probable granule-bound starch synthase 1, chloropl... [more]
SSG1_MANES8.738e-8274.74Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SOLTU1.947e-8173.68Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_HORVU6.923e-7970.90Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_SORBI2.227e-7770.90Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1_MAIZE1.444e-7670.37Granule-bound starch synthase 1, chloroplastic/amy... [more]
SSG1B_HORVU1.444e-7668.95Granule-bound starch synthase 1b, chloroplastic/am... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-A05-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728299 ID=EY728299; Name=EY728299; organism=Citrus sinensis; type=EST; length=801bp
AATTGAGCTGAAAGTTGGAGACAAAATTGAAAAAGTTCGCTTCTTGCATT
GCCACAAGAGAGGAGTTGATCGGGTGTTTGTGGATCATCCTTGGTTTCTT
GCGAAGGTGTGGGGTAAAACCCAATCCAAAATCTATGGGCCTAGGACTGG
AGAGGACTACCAGGACAACCAACTTCGCTTCAGCTTGTTGTGCCAGGCAG
CTCTTGAACCACCGAGAATTCTGAATCTTAACAGCAACGAATATTTCTCT
GGACCATATGGTGAAGATGTCGTTTTTGTTGCTAATGACTGGCATACTTC
CCTTATCCCTTGTTACCTGAAAACTATGTATAAGCCCAAAGGGATGTACA
AAAGTGCCAGAGTGGTGATATGTATCCACAATATTGCTTACCAGGGAAGA
TTTGCATTTGAGGATTTTGGACTTCTCAACCTTCCAACTCATTTCAAAAG
CTCTTTTGACTTTATTGATGGATACAATAAACCTGTGATAGGAAGAAAAA
TCTGCTGGATGATAGCTGGAATATTAGAATCAGACATGGTCTGAAGTGGG
AGCCCAGCATATGCCCAAGACCGGTGTCTGGTGAACACCAAGGAATCGAA
TTGGATGACATCCTCCCCTAGAGTCGCCAAGGCGGCAACTCAGACGAGGT
CATGGAAGCGCGCAGCTCCTGCGGCTGGTCCGGAGGATAGGCTGGTCCCC
GCCGGACCCCTGCTCCTTCCGGCCTCCGCCCCCCCGCCGCGGGTGGAGAG
GTGCCGCCTACGTCCCCGCCTCCCACAGGGCGGGCGGGAGAGTGCATGCA
T
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