EY728296

Overview
NameEY728296
Unique NameEY728296
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length812
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728296_ssr175 microsatellite EY728296_ssr175:175..186. BLAST: Citrus ESTs to Prunus persica proteins V1
EY728296_ssr279 microsatellite EY728296_ssr279:279..299. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig11726 contig Csv1_Contig11726:1..813. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728296 vs. ExPASy Swiss-Prot
Match: APL_ARATH (Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 4.382e-20
Identity = 44/55 (80.00%), Postives = 52/55 (94.55%), Query Frame = 3
Query:  522 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLRKYRLAK 686
            RLRWT ELHERFVDAVAQLGGPD+ATPK ++RVMGV+GLT+YH+KSHL+K+RL K
Sbjct:   36 RLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90          
BLAST of EY728296 vs. ExPASy Swiss-Prot
Match: MYBF_ARATH (Putative Myb family transcription factor At1g14600 OS=Arabidopsis thaliana GN=At1g14600 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 9.785e-12
Identity = 35/52 (67.31%), Postives = 40/52 (76.92%), Query Frame = 3
Query:  522 RLRWTHELHERFVDAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLRKYR 677
            RLRWT ELH  FV AV  LGG  +ATPK VL++M V+GLTI HVKSHL+ YR
Sbjct:   25 RLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGLTISHVKSHLQMYR 76          
The following BLAST results are available for this feature:
BLAST of EY728296 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
APL_ARATH4.382e-2080.00Myb family transcription factor APL OS=Arabidopsis... [more]
MYBF_ARATH9.785e-1267.31Putative Myb family transcription factor At1g14600... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-002-A02-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728296 ID=EY728296; Name=EY728296; organism=Citrus sinensis; type=EST; length=812bp
CCACGCGTCCGCGGACGCGTGGGGAGTTTTGCAAATTTGATTAATTATCT
AAAGTAATTAGTTGTTTTATTATTAATGAAATTGATTAAAGTAGTAGCTC
TGCATCTGCTTGGTGGTGCTGGCTCAGCTCTGCTCATTTGACCAAGACCT
ACAAAACTTTACCGTATCAATCAATCTCTCTCTCTCTTTCTCTATCTCTC
TATCTATTCAACTCTACAAACCTTTATTAATATGATTTAATTTAAGTTTA
TTAATAATAAAATAGAAATAGCAATAGAAGCAGCAGCAGCAGCAGCAGCT
CCGAAATCGCAGGGCACGATTATGTCATTTCTGGATTTCAGGAATGATTT
CTAGATCTGCATGAATGACAGATGTATCAACCAAATAGTGTTCCAAGTTC
AAGTTTAGTCCGCAGCAACTCATTAGTTCATGGTCAGCATTTAGATTGTG
GTTCTAGTCAGATGGACCCTATGAATGGAGGGAACAGTCTCAACAACAAC
CCTAGTCTTGCTTCANNAGCAAGATTGCGTTGGACGCATGAACTTCATGA
ACGCTTTGTTGATGCTGTAGCACAGCTTGGTGGGCCAGATCGGGCTACTC
CTAAAGGTGTGCTTAGAGTCATGGGTGTGCAAGGTTTAACAATATACCAT
GTCAAGAGCCATTTACGGAAATATCGACTTGCAAAATACCTCCCTGACTC
CTCGTCGGATGTTGACAGAACGGAACTGGGGATAGCTTTCCCCCTTGGAT
TGTTCCTCTGGGAATGAATTACTGGAGCAGTAAGCTTGGATGGAGGGTCA
AAACGACGGGGT
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