EY728280

Overview
NameEY728280
Unique NameEY728280
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length911
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig1824 contig Csv1_Contig1824:71..982. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY728280 vs. ExPASy Swiss-Prot
Match: NAC8_ARATH (NAC domain-containing protein 8 OS=Arabidopsis thaliana GN=NAC008 PE=2 SV=1)

HSP 1 Score: 399.438 bits (1025), Expect = 1.443e-110
Identity = 190/262 (72.52%), Postives = 213/262 (81.30%), Query Frame = 3
Query:   15 MAGPSWLVDSNRIATKIKSASGLGDPERVKWKSNPTKACPNCHHVIDNSDVAHEWPGLPRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPGVKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQKGCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDRDYVISKISYQQQQ---AKYGDKIETDILEST-GAIIPKVDPVTPKLVTPDPTRTER 788
            MAG SWL+DSNRIATKI SAS   DP +V WKSNP++ CP C HVIDNSDV  +WPGLPRGVKFDPSD EIIWHLLAK+GL GL+ HPFIDEFIPTV+QD GICYTHP+NLPGVK DG+ +HFF++AIKAYSTGTRKRRKI+ DDFG+VRWHKTGRTKPV+LDGVQ+GCKKIMVLY     GGKA KTNWVMHQYHLG EEDEK+ DYV+SKI YQQ Q    K GDK E ++ E    A+ P  DPVTPKL TP+P    R
Sbjct:    1 MAGRSWLIDSNRIATKIMSASASSDPRQVVWKSNPSRHCPKCQHVIDNSDVVDDWPGLPRGVKFDPSDPEIIWHLLAKSGLSGLSSHPFIDEFIPTVNQDDGICYTHPKNLPGVKSDGTVSHFFHKAIKAYSTGTRKRRKIHDDDFGDVRWHKTGRTKPVVLDGVQRGCKKIMVLY-----GGKAVKTNWVMHQYHLGIEEDEKEGDYVVSKIFYQQPQQLVVKRGDKAEQEVSEDIFAAVTPTADPVTPKLATPEPRNAVR 257          
BLAST of EY728280 vs. ExPASy Swiss-Prot
Match: NAC4_ARATH (NAC domain-containing protein 4 OS=Arabidopsis thaliana GN=NAC004 PE=2 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 2.142e-13
Identity = 54/190 (28.42%), Postives = 88/190 (46.32%), Query Frame = 3
Query:  189 PRGVKFDPSDQEIIWHLLAKAGLEGLNPHPFIDEFIPTVDQDGGICYTHPQNLPG---VKQDGSAAHFFYRAIKAYSTGTRKRRKINGDDFGEVRWHKTGRTKPVMLDGVQK---GCKKIMVLYMSMVRGGKAEKTNWVMHQYHLGTEEDEKDRDYVISKISYQQQQAKYGDKIETDILESTGAIIPKVD 740
            P G +F P+D+EI+ H L    L+    H  +DE I TVD    IC   P +LP    +K      +FF      Y+ G ++RR+ N        W KTG+T  VM     +   G K+++V      +     KT+WVMH+YH  +    +   Y + K+ ++ ++ +         +E   ++IP V+
Sbjct:    4 PVGFRFRPNDEEIVDHYLRPKNLDSDTSH--VDEVISTVD----ICSFEPWDLPSKSMIKSRDGVWYFFSVKEMKYNRGDQQRRRTNSGF-----WKKTGKTMTVMRKRGNREKIGEKRVLVF-----KNRDGSKTDWVMHEYHATSLFPNQMMTYTVCKVEFKGEETEISSSSTGSEIEQIHSLIPLVN 177          
The following BLAST results are available for this feature:
BLAST of EY728280 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
NAC8_ARATH1.443e-11072.52NAC domain-containing protein 8 OS=Arabidopsis tha... [more]
NAC4_ARATH2.142e-1328.42NAC domain-containing protein 4 OS=Arabidopsis tha... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G07-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728280 ID=EY728280; Name=EY728280; organism=Citrus sinensis; type=EST; length=911bp
CCACGCGTCCGGTGATGGCTGGACCGTCATGGTTGGTGGACAGTAACAGA
ATTGCTACAAAGATCAAGAGTGCATCTGGCTTAGGTGATCCGGAAAGAGT
TAAATGGAAGAGCAATCCTACGAAAGCTTGTCCCAATTGCCACCATGTCA
TCGATAACAGTGATGTTGCTCACGAGTGGCCAGGATTACCCAGGGGTGTG
AAATTTGACCCATCTGATCAAGAAATTATATGGCATTTACTTGCAAAAGC
TGGTTTGGAAGGCTTGAATCCCCATCCATTTATTGATGAGTTCATCCCTA
CTGTTGATCAAGATGGTGGAATCTGTTACACCCATCCTCAGAATTTGCCA
GGTGTTAAGCAAGATGGAAGTGCAGCACACTTCTTTTATAGAGCTATCAA
GGCTTACAGTACTGGAACTCGAAAGCGTAGAAAGATAAATGGTGATGATT
TTGGTGAGGTGCGCTGGCACAAGACTGGCAGGACTAAACCAGTGATGTTA
GATGGGGTTCAAAAAGGGTGTAAGAAGATTATGGTTCTCTATATGAGCAT
GGTCAGAGGAGGGAAAGCTGAGAAAACTAATTGGGTGATGCACCAGTATC
ACTTGGGAACAGAGGAGGATGAAAAGGATAGGGACTATGTTATATCTAAA
ATATCTTATCAGCAGCAACAGGCCAAGTATGGTGATAAAATTGAAACAGA
TATTCTTGAAAGCACTGGTGCCATCATTCCCAAAGTAGATCCAGTCACTC
CCAAGTTAGTGACTCCAGACCCNACTCGTACTGAAAGGCATCCTGATTTT
GGCCCAGGCAAGAGTCTCCTACTACAGATGCATTTGATCAGCATCTGAGA
TAAGCATGTGGAAGAGTTCACCTTTATGTGAAACCCGGTTCTATGATAAA
TTGAGCAGAAA
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