EY728275

Overview
NameEY728275
Unique NameEY728275
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length937
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB_ORYSJ (Probable voltage-gated potassium channel subunit beta OS=Oryza sativa subsp. japonica GN=KOB1 PE=1 SV=2)

HSP 1 Score: 210.69 bits (535), Expect = 9.870e-54
Identity = 101/140 (72.14%), Postives = 119/140 (85.00%), Query Frame = 2
Query:   89 TGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEETENSKGF--DRGITIW 502
            +G RVSQLSYGA V+FGNQLDV EAK+LL   RD G+NFFDNAEVYANGRAEEIMGQA+R+LG +RSD+VVSTK+FWGGQGPNDKGLSRKHIV+G + S KRLDMDYVDV+YCHRPD +TP+EET  +  +  D G+  +
Sbjct:    9 SGLRVSQLSYGAWVTFGNQLDVKEAKALLQACRDAGVNFFDNAEVYANGRAEEIMGQAMRDLGWRRSDVVVSTKLFWGGQGPNDKGLSRKHIVEGLRGSLKRLDMDYVDVVYCHRPDATTPVEETVRAMNWVIDHGMAFY 148          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB2_XENLA (Voltage-gated potassium channel subunit beta-2 OS=Xenopus laevis GN=kcnab2 PE=2 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 1.638e-32
Identity = 69/142 (48.59%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ G +RS +V++TKIFWGG+   ++GLSRKHI++G KAS +RL +DYVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLDYVDVVFANRPDPNTPMEET 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB2_HUMAN (Voltage-gated potassium channel subunit beta-2 OS=Homo sapiens GN=KCNAB2 PE=1 SV=2)

HSP 1 Score: 138.658 bits (348), Expect = 4.767e-32
Identity = 68/142 (47.89%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ G +RS +V++TKIFWGG+   ++GLSRKHI++G KAS +RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB2_BOVIN (Voltage-gated potassium channel subunit beta-2 OS=Bos taurus GN=KCNAB2 PE=1 SV=1)

HSP 1 Score: 138.658 bits (348), Expect = 4.767e-32
Identity = 68/142 (47.89%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ G +RS +V++TKIFWGG+   ++GLSRKHI++G KAS +RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEQLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB2_RAT (Voltage-gated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.225e-32
Identity = 68/142 (47.89%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ G +RS +V++TKIFWGG+   ++GLSRKHI++G KAS +RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB2_MOUSE (Voltage-gated potassium channel subunit beta-2 OS=Mus musculus GN=Kcnab2 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 6.225e-32
Identity = 68/142 (47.89%), Postives = 102/142 (71.83%), Query Frame = 2
Query:   38 Y*NPKSKIRAKEILIQETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEET 463
            Y +PK +++    L  ++G RVS L  G  V+FG Q+    A+ L+  + D+GIN FD AEVYA G+AE ++G  I++ G +RS +V++TKIFWGG+   ++GLSRKHI++G KAS +RL ++YVDV++ +RPD +TP+EET
Sbjct:   29 YGSPKRQLQFYRNL-GKSGLRVSCLGLGTWVTFGGQITDEMAEHLMTLAYDNGINLFDTAEVYAAGKAEVVLGNIIKKKGWRRSSLVITTKIFWGGKAETERGLSRKHIIEGLKASLERLQLEYVDVVFANRPDPNTPMEET 169          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_RAT (Voltage-gated potassium channel subunit beta-1 OS=Rattus norvegicus GN=Kcnab1 PE=1 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_RABIT (Voltage-gated potassium channel subunit beta-1 OS=Oryctolagus cuniculus GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   96 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 220          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_MUSPU (Voltage-gated potassium channel subunit beta-1 OS=Mustela putorius GN=KCNAB1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   85 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 209          
BLAST of EY728275 vs. ExPASy Swiss-Prot
Match: KCAB1_MOUSE (Voltage-gated potassium channel subunit beta-1 OS=Mus musculus GN=Kcnab1 PE=2 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 9.939e-30
Identity = 59/125 (47.20%), Postives = 92/125 (73.60%), Query Frame = 2
Query:   86 ETGPRVSQLSYGA*VSFGNQLDVTEAKSLLHCSRDHGINFFDNAEVYANGRAEEIMGQAIRELGRKRSDIVVSTKIFWGGQGPNDKGLSRKHIVKGTKASSKRLDMDYVDVIYCHRPDTSTPIEE 460
            ++G RVS L  G  V+FG Q+    A+ L+  + + G+N FD AEVYA G+AE I+G  I++ G +RS +V++TK++WGG+   ++GLSRKHI++G K S +RL ++YVDV++ +RPD++TP+EE
Sbjct:   78 KSGLRVSCLGLGTWVTFGGQISDEVAERLMTIAYESGVNLFDTAEVYAAGKAEVILGSIIKKKGWRRSSLVITTKLYWGGKAETERGLSRKHIIEGLKGSLQRLQLEYVDVVFANRPDSNTPMEE 202          
The following BLAST results are available for this feature:
BLAST of EY728275 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 24
Match NameE-valueIdentityDescription
KCAB_ORYSJ9.870e-5472.14Probable voltage-gated potassium channel subunit b... [more]
KCAB2_XENLA1.638e-3248.59Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_HUMAN4.767e-3247.89Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_BOVIN4.767e-3247.89Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_RAT6.225e-3247.89Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB2_MOUSE6.225e-3247.89Voltage-gated potassium channel subunit beta-2 OS=... [more]
KCAB1_RAT9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_RABIT9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MUSPU9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]
KCAB1_MOUSE9.939e-3047.20Voltage-gated potassium channel subunit beta-1 OS=... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-G01-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728275 ID=EY728275; Name=EY728275; organism=Citrus sinensis; type=EST; length=937bp
CCACGCGTCCGCCAAAATCGATTCCCCCCTCTCTTTCTACTGAAACCCTA
AATCTAAAATCAGAGCCAAGGAAATATTGATTCAAGAAACGGGGCCGAGA
GTGAGCCAGCTCTCGTACGGAGCGTGAGTCAGCTTCGGGAACCAGCTGGA
CGTGACGGAGGCGAAGTCGCTCTTGCATTGCTCCCGCGACCACGGCATCA
ACTTCTTCGACAATGCCGAGGTCTACGCCAACGGCCGCGCGGAAGAGATC
ATGGGCCAGGCCATTCGTGAGCTCGGGCGGAAGCGATCCGACATCGTCGT
TTCCACCAAGATCTTTTGGGGCGGCCAGGGCCCCAACGATAAAGGCCTCT
CCAGAAAACACATCGTCAAGGGCACCAAAGCTTCCTCCAAACGCCTCGAC
ATGGACTACGTCGACGTTATTTATTGTCACAGGCCAGACACATCGACACC
GATAGAGGAGACGGAAAATTCCAAGGGATTTGACAGAGGCATCACTATCT
GGTGCAGGATAATCCATAATATCACCCCTTTCTATGTTGGTTTTATTTGG
AATGGGACTAAATAATTTATGTACAGTGGACCACCTCTACGGCGGGCTTT
GTCGACAACAAGTACTGATGGGGACTTCTTGGCTAATGATAATAAAAGAA
GTTTCCCCTCACTTTCATGGGAATTTGCATCAATTAAAGGGAGACGACTG
GTTGGGAAACTGAATCCTATTCTAGCTGTGAATTTTTATGCTCCCTGGGT
GCTACTGGAATAACACCCCTGAAACCATCGTGGGCACAAAGCACCGAACG
CATGGAGAGGGGTCTGCCCTCACTGGGAAGGACTAATTCTTTTAGGTAAA
ATTTGTTGGCCTGTAAAAACAGAATNTGGGAAGGGAGACACGAGAAACAG
GGGTACACTCATTGTCACTATCTGCGAAGGGAAAGCG
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