EY728268

Overview
NameEY728268
Unique NameEY728268
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length626
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY728268_ssr547 microsatellite EY728268_ssr547:547..561. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY728268 vs. ExPASy Swiss-Prot
Match: LOX6_ARATH (Lipoxygenase 6, choloroplastic OS=Arabidopsis thaliana GN=LOX6 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.104e-20
Identity = 47/71 (66.20%), Postives = 56/71 (78.87%), Query Frame = -3
Query:   19 FLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKD 231
            FL SLPTQLQATKVMAVQ+TLSTHSPDEEYL ++ ++  HW  D +V+  F+KFS  L +IEK IN RNKD
Sbjct:  811 FLGSLPTQLQATKVMAVQETLSTHSPDEEYLIELREVQRHWFQDEQVVKYFNKFSEELVKIEKTINERNKD 881          

HSP 2 Score: 69.3218 bits (168), Expect = 1.786e-11
Identity = 33/50 (66.00%), Postives = 40/50 (80.00%), Query Frame = 3
Query:  198 LLEAEWAVKTKNKDFRLKGRCGAGIPPYELLLPSSGPGVTGRGIPNSISI 347
            L++ E  +  +NKD +LK R GAG+PPYELLLP+S  GVTGRGIPNSISI
Sbjct:  868 LVKIEKTINERNKDKKLKNRTGAGMPPYELLLPTSPHGVTGRGIPNSISI 917          
BLAST of EY728268 vs. ExPASy Swiss-Prot
Match: LOX4_ARATH (Lipoxygenase 4, chloroplastic OS=Arabidopsis thaliana GN=LOX4 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 48/100 (48.00%), Postives = 60/100 (60.00%), Query Frame = -3
Query:   19 RLLPDQRKEEAVHMAECQHHICL*DGNLYFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKD 318
            RL+PD+   E     E        D   YF SS+P+ LQ TK MAV DTLSTHSPDEEY+G+  Q  S W  D E+++ F  FSA +  IEK I+ RN+D
Sbjct:  800 RLIPDESDPEFTSFIE--------DPQKYFFSSMPSLLQTTKFMAVVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVDAFYGFSAEIGRIEKEIDKRNRD 890          
BLAST of EY728268 vs. ExPASy Swiss-Prot
Match: LOX3_ARATH (Lipoxygenase 3, chloroplastic OS=Arabidopsis thaliana GN=LOX3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.615e-12
Identity = 37/72 (51.39%), Postives = 47/72 (65.28%), Query Frame = -3
Query:   19 YFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKD 234
            Y+ SS+P+  Q +K MAV DTLSTHSPDEEY+G+  Q  S W  D E++  F  F+A +  IEK I  RN D
Sbjct:  813 YYFSSMPSLAQTSKFMAVVDTLSTHSPDEEYIGE-RQQPSIWTGDAEIVEAFYGFAAEIGRIEKEIEKRNAD 883          
BLAST of EY728268 vs. ExPASy Swiss-Prot
Match: LOX6_ORYSJ (Probable lipoxygenase 6 OS=Oryza sativa subsp. japonica GN=Os03g0179900 PE=2 SV=2)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 42/101 (41.58%), Postives = 59/101 (58.42%), Query Frame = -3
Query:   19 RLLPDQRKEEAVHMAECQHHICL*DGNLYFLSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQ-VNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKD 318
            RLLPD  ++ A + A       L D + +FL+++P  L+ATK MAV DTLSTHSPDEEYLG+  ++    W  D   +     F+A++   E+ I  RN D
Sbjct:  788 RLLPDLERDAAEYAA------FLADPHRFFLNAMPGVLEATKFMAVVDTLSTHSPDEEYLGEGRDEGGVPWTADEAAVAAHGMFAADVRRAEETIERRNAD 882          
BLAST of EY728268 vs. ExPASy Swiss-Prot
Match: LOX23_HORVU (Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare GN=LOX2.3 PE=1 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 2.332e-11
Identity = 35/70 (50.00%), Postives = 47/70 (67.14%), Query Frame = -3
Query:   19 LSSLPTQLQATKVMAVQDTLSTHSPDEEYLGQVNQLHSHWINDPEVLNMFDKFSANLEEIEKIINTRNKD 228
            L SLP+Q+QA KVMA  D LS+HSPDEEY+G+  +    W+ +P V   F+KFS  L+E E  I+ RN +
Sbjct:  793 LQSLPSQMQAIKVMATLDILSSHSPDEEYMGEYAE--PAWLAEPMVKAAFEKFSGRLKEAEGTIDMRNNN 860          
The following BLAST results are available for this feature:
BLAST of EY728268 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
LOX6_ARATH2.104e-2066.20Lipoxygenase 6, choloroplastic OS=Arabidopsis thal... [more]
LOX4_ARATH3.145e-1648.00Lipoxygenase 4, chloroplastic OS=Arabidopsis thali... [more]
LOX3_ARATH1.615e-1251.39Lipoxygenase 3, chloroplastic OS=Arabidopsis thali... [more]
LOX6_ORYSJ2.332e-1141.58Probable lipoxygenase 6 OS=Oryza sativa subsp. jap... [more]
LOX23_HORVU2.332e-1150.00Lipoxygenase 2.3, chloroplastic OS=Hordeum vulgare... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-F06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728268 ID=EY728268; Name=EY728268; organism=Citrus sinensis; type=EST; length=626bp
CCACGCGTCCGACAAGAAATCTTTATTTCTTGTATTTATTATCTTTTCAA
TCTCCTCCAGATTAGCAGAGAACTTATCAAACATATTCAAAACTTCAGGG
TCATTGATCCAGTGGCTGTGTAACTGGTTCACCTGACCTAGATACTCTTC
ATCAGGAGAGTGAGTGGACAGAGTGTCTTGGACAGCCATCACTTTAGTTG
CTTGAAGCTGAGTGGGCAGTGAAGACAAAAAATAAAGATTTCCGTCTTAA
AGGCAGATGTGGTGCTGGCATTCCGCCATATGAACTGCTTCTTCCTTCCT
CTGGTCCGGGAGTAACCGGTCGAGGAATCCCCAATAGTATTTCTATCTGA
TGGACTTAGCTAAATTGAGACACTGGTAGATGCCTTTTTGTCACTATCGG
TTAGTGCGTACCATTTTATTTCTGTGCTGTGCAGTTGTATGGACCTTCAA
TAGATCTTTTGGGGTTCGGTATTTGATATTAAAGCTCTGTAATTTGTGGG
TAAAAGATATGATAGGACACAGAAAACTTGGAATATCATGATATTGGATC
TGATCTGATCTTTGTAAAGCAACATATAATATGCTGCAACTTATATTGAA
CAAAAAAAAAAAAAAAAAAAAAAAAA
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