EY728239

Overview
NameEY728239
Unique NameEY728239
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length927
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_RAT (Proteasome subunit alpha type-6 OS=Rattus norvegicus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.955e-47
Identity = 103/226 (45.58%), Postives = 136/226 (60.18%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW*VFISF*VEF*FACLVFDIFCKLLTEHCLFPYSFFVTLLLKFWLNVAVLLSEKQLC*FPFMYRIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            GRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+ +G + TGM AD+R+ VQ+ARYEAA +++KYGYE+PV                       D+ CK                                        RIAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEK+
Sbjct:   20 GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV-----------------------DMLCK----------------------------------------RIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 182          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_MOUSE (Proteasome subunit alpha type-6 OS=Mus musculus GN=Psma6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.955e-47
Identity = 103/226 (45.58%), Postives = 136/226 (60.18%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW*VFISF*VEF*FACLVFDIFCKLLTEHCLFPYSFFVTLLLKFWLNVAVLLSEKQLC*FPFMYRIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            GRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+ +G + TGM AD+R+ VQ+ARYEAA +++KYGYE+PV                       D+ CK                                        RIAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEK+
Sbjct:   20 GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITESIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV-----------------------DMLCK----------------------------------------RIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 182          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_HUMAN (Proteasome subunit alpha type-6 OS=Homo sapiens GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.955e-47
Identity = 103/226 (45.58%), Postives = 136/226 (60.18%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW*VFISF*VEF*FACLVFDIFCKLLTEHCLFPYSFFVTLLLKFWLNVAVLLSEKQLC*FPFMYRIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            GRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+ +G + TGM AD+R+ VQ+ARYEAA +++KYGYE+PV                       D+ CK                                        RIAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEK+
Sbjct:   20 GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV-----------------------DMLCK----------------------------------------RIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 182          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_BOVIN (Proteasome subunit alpha type-6 OS=Bos taurus GN=PSMA6 PE=1 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 3.955e-47
Identity = 103/226 (45.58%), Postives = 136/226 (60.18%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW*VFISF*VEF*FACLVFDIFCKLLTEHCLFPYSFFVTLLLKFWLNVAVLLSEKQLC*FPFMYRIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            GRL+QVEYAFKA+   G+TS+ VRGKD   +VTQKKVPDKLLD ++VTHLF IT+ +G + TGM AD+R+ VQ+ARYEAA +++KYGYE+PV                       D+ CK                                        RIAD SQVYTQ+A MRPLG   +++ IDEE GP+++KCDPAG++ G KAT+AG+K+ E+ +FLEK+
Sbjct:   20 GRLYQVEYAFKAINQGGLTSVAVRGKDCAVIVTQKKVPDKLLDSSTVTHLFKITENIGCVMTGMTADSRSQVQRARYEAANWKYKYGYEIPV-----------------------DMLCK----------------------------------------RIADISQVYTQNAEMRPLGCCMILIGIDEEQGPQVYKCDPAGYYCGFKATAAGVKQTESTSFLEKK 182          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_TOBAC (Proteasome subunit alpha type-6 OS=Nicotiana tabacum GN=PAA1 PE=2 SV=1)

HSP 1 Score: 186.037 bits (471), Expect = 2.563e-46
Identity = 92/98 (93.88%), Postives = 95/98 (96.94%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            GRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD TSV+HLFPITKYLGLLATGM ADARTLVQQAR EAAEFRFKYGYEMPVDVL+KW
Sbjct:   20 GRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQTSVSHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFKYGYEMPVDVLSKW 117          

HSP 2 Score: 125.176 bits (313), Expect = 2.140e-31
Identity = 59/65 (90.77%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  496 IADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            IADKSQVYTQHAYMRPLGVVAM+L IDEE GP+LFKCDPAGHFFGHKATSAG KEQEAINFLEK+
Sbjct:  118 IADKSQVYTQHAYMRPLGVVAMILGIDEEKGPQLFKCDPAGHFFGHKATSAGSKEQEAINFLEKK 182          

HSP 3 Score: 32.3426 bits (72), Expect = 2.140e-31
Identity = 19/48 (39.58%), Postives = 28/48 (58.33%), Query Frame = 3
Query:  675 FLGEEMKNDPAFTFQKLCRLQFPTCISPCR-GF*ASEIXXCVXSKENP 815
            FL ++MKNDPAF++++  +       S  +  F ASEI   V  KE+P
Sbjct:  178 FLEKKMKNDPAFSYEETVQTAISALQSVLQEDFKASEIEVGVVKKEDP 225          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_SOYBN (Proteasome subunit alpha type-6 OS=Glycine max GN=PAA1 PE=2 SV=2)

HSP 1 Score: 184.496 bits (467), Expect = 7.458e-46
Identity = 91/98 (92.86%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            GRLFQVEYAFKAVKAAG+TSIGVRGKDS+CVVT KKVPDKLLD+TSVTHLFPITKYLGLLATGM ADARTLVQQAR EAAEFRF YGYEMPVDVLAKW
Sbjct:   20 GRLFQVEYAFKAVKAAGITSIGVRGKDSICVVTHKKVPDKLLDNTSVTHLFPITKYLGLLATGMTADARTLVQQARNEAAEFRFTYGYEMPVDVLAKW 117          

HSP 2 Score: 123.635 bits (309), Expect = 2.140e-31
Identity = 57/65 (87.69%), Postives = 63/65 (96.92%), Query Frame = 1
Query:  496 IADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            IADKSQVYTQHAYMRPLGVVAMVL ID+E GP+L+KCDPAGH+FGHKATSAGLK+QEAINFLEK+
Sbjct:  118 IADKSQVYTQHAYMRPLGVVAMVLGIDDEYGPQLYKCDPAGHYFGHKATSAGLKDQEAINFLEKK 182          

HSP 3 Score: 33.8834 bits (76), Expect = 2.140e-31
Identity = 19/49 (38.78%), Postives = 29/49 (59.18%), Query Frame = 3
Query:  675 FLGEEMKNDPAFTFQKLCRLQFPTCISPCR-GF*ASEIXXCVXSKENPE 818
            FL ++MKNDP+FT+++  +       S  +  F A+EI   V  K+NPE
Sbjct:  178 FLEKKMKNDPSFTYEETVQTAISALQSVLQEDFKATEIEVGVVRKDNPE 226          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_ORYSJ (Proteasome subunit alpha type-6 OS=Oryza sativa subsp. japonica GN=PAA1 PE=2 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 3.702e-45
Identity = 89/98 (90.82%), Postives = 95/98 (96.94%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            GRL+QVEYAFKAVK+AGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKY+GLLATG+ ADAR+LV QAR EAAEFRFK+GYEMPVDVLAKW
Sbjct:   20 GRLYQVEYAFKAVKSAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYIGLLATGLTADARSLVYQARNEAAEFRFKWGYEMPVDVLAKW 117          

HSP 2 Score: 119.783 bits (299), Expect = 2.256e-26
Identity = 63/100 (63.00%), Postives = 72/100 (72.00%), Query Frame = 1
Query:  496 IADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR*RMILRLPFRNCADCNFPP-ASVPAEDFRXVKLXV 792
            IADK+QVYTQHAYMRPLGVVAMVL  DEE   +LFKCDPAGHFFGHKATSAGLKEQEAINFLEK+ +   +  +            SV  EDF+  ++ V
Sbjct:  118 IADKAQVYTQHAYMRPLGVVAMVLGYDEEKNAQLFKCDPAGHFFGHKATSAGLKEQEAINFLEKKMKDDPQFSYEETVQIAISALQSVLQEDFKATEIEV 217          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6B_ARATH (Proteasome subunit alpha type-6-B OS=Arabidopsis thaliana GN=PAA2 PE=1 SV=1)

HSP 1 Score: 179.104 bits (453), Expect = 3.134e-44
Identity = 86/98 (87.76%), Postives = 94/98 (95.92%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            GRLFQVEYAFKAVKAAG+TSIGVRGKDSVCVVTQKKVPDKLLD +SV+HLFP+TKYLGLLATGM AD+R+LVQQAR EAAEFRF+YGYEMP D+LAKW
Sbjct:   20 GRLFQVEYAFKAVKAAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVSHLFPVTKYLGLLATGMTADSRSLVQQARNEAAEFRFQYGYEMPADILAKW 117          

HSP 2 Score: 123.25 bits (308), Expect = 2.665e-28
Identity = 57/65 (87.69%), Postives = 62/65 (95.38%), Query Frame = 1
Query:  496 IADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            IADKSQVYTQHAYMRPLGVVAMVL IDEE GP L+KCDPAGHF+GHKATSAG+KEQEA+NFLEK+
Sbjct:  118 IADKSQVYTQHAYMRPLGVVAMVLGIDEERGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKK 182          

HSP 3 Score: 23.8682 bits (50), Expect = 2.665e-28
Identity = 15/48 (31.25%), Postives = 25/48 (52.08%), Query Frame = 3
Query:  675 FLGEEMKNDPAFTFQKLCRLQFPTCISPCR-GF*ASEIXXCVXSKENP 815
            FL ++MK +PAFT+ +  +       S  +  F A+EI   V   ++P
Sbjct:  178 FLEKKMKENPAFTYDETVQTAISALQSVLQEDFKATEIEVGVVRADDP 225          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6A_ARATH (Proteasome subunit alpha type-6-A OS=Arabidopsis thaliana GN=PAA1 PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.555e-43
Identity = 85/98 (86.73%), Postives = 93/98 (94.90%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW 306
            GRLFQVEYAFKAVK AG+TSIGVRGKDSVCVVTQKKVPDKLLD +SVTHLFPITKY+GL+ATG+ ADAR+LVQQAR +AAEFRF YGYEMPVD+LAKW
Sbjct:   20 GRLFQVEYAFKAVKTAGITSIGVRGKDSVCVVTQKKVPDKLLDQSSVTHLFPITKYIGLVATGITADARSLVQQARNQAAEFRFTYGYEMPVDILAKW 117          

HSP 2 Score: 122.865 bits (307), Expect = 2.665e-27
Identity = 65/112 (58.04%), Postives = 77/112 (68.75%), Query Frame = 1
Query:  496 IADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR*RMILRLPFRNCADCNFPP-ASVPAEDFRXVKLXVAX*ARRIQNQSF 828
            IADKSQVYTQHAYMRPLGVVAMV+ +DEE GP L+KCDPAGHF+GHKATSAG+KEQEA+NFLEK+ +      F            SV  EDF+  ++ V     R +N  F
Sbjct:  118 IADKSQVYTQHAYMRPLGVVAMVMGVDEENGPLLYKCDPAGHFYGHKATSAGMKEQEAVNFLEKKMKENPSFTFDETVQTAISALQSVLQEDFKATEIEVG--VVRAENPEF 227          
BLAST of EY728239 vs. ExPASy Swiss-Prot
Match: PSA6_DROME (Proteasome subunit alpha type-6 OS=Drosophila melanogaster GN=Prosalpha1 PE=2 SV=2)

HSP 1 Score: 135.961 bits (341), Expect = 3.042e-31
Identity = 86/226 (38.05%), Postives = 115/226 (50.88%), Query Frame = 1
Query:   13 GRLFQVEYAFKAVKAAGVTSIGVRGKDSVCVVTQKKVPDKLLDHTSVTHLFPITKYLGLLATGMIADARTLVQQARYEAAEFRFKYGYEMPVDVLAKW*VFISF*VEF*FACLVFDIFCKLLTEHCLFPYSFFVTLLLKFWLNVAVLLSEKQLC*FPFMYRIADKSQVYTQHAYMRPLGVVAMVLSIDEECGPRLFKCDPAGHFFGHKATSAGLKEQEAINFLEKR 690
            GRL+QVEYAFKA+    +T++ ++  D   V TQKKV +K +   +VTHLF ITK +G   TG IAD+R+ VQ+ARYEAA FR  Y Y   + V                     D+ C+                                        RIAD +QVYTQ+A MRPLG   ++++ D E GP ++K DPAG+F G KA S G K  EA ++LEK+
Sbjct:   20 GRLYQVEYAFKAIAQENITTVALKSGDCAVVATQKKVTEKNIVPETVTHLFRITKDIGCAMTGRIADSRSQVQKARYEAANFR--YKYGYEMPV---------------------DVLCR----------------------------------------RIADINQVYTQNAEMRPLGCSMVLIAYDNEIGPSVYKTDPAGYFSGFKACSVGAKTLEANSYLEKK 182          
The following BLAST results are available for this feature:
BLAST of EY728239 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 73
Match NameE-valueIdentityDescription
PSA6_RAT3.955e-4745.58Proteasome subunit alpha type-6 OS=Rattus norvegic... [more]
PSA6_MOUSE3.955e-4745.58Proteasome subunit alpha type-6 OS=Mus musculus GN... [more]
PSA6_HUMAN3.955e-4745.58Proteasome subunit alpha type-6 OS=Homo sapiens GN... [more]
PSA6_BOVIN3.955e-4745.58Proteasome subunit alpha type-6 OS=Bos taurus GN=P... [more]
PSA6_TOBAC2.563e-4693.88Proteasome subunit alpha type-6 OS=Nicotiana tabac... [more]
PSA6_SOYBN7.458e-4692.86Proteasome subunit alpha type-6 OS=Glycine max GN=... [more]
PSA6_ORYSJ3.702e-4590.82Proteasome subunit alpha type-6 OS=Oryza sativa su... [more]
PSA6B_ARATH3.134e-4487.76Proteasome subunit alpha type-6-B OS=Arabidopsis t... [more]
PSA6A_ARATH1.555e-4386.73Proteasome subunit alpha type-6-A OS=Arabidopsis t... [more]
PSA6_DROME3.042e-3138.05Proteasome subunit alpha type-6 OS=Drosophila mela... [more]

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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-C06-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728239 ID=EY728239; Name=EY728239; organism=Citrus sinensis; type=EST; length=927bp
CCACGCGTCCGGGGTCGTCTCTTTCAAGTCGAGTATGCTTTCAAAGCTGT
TAAGGCTGCTGGGGTTACCTCTATCGGTGTTCGAGGAAAGGATTCAGTCT
GTGTTGTGACTCAGAAGAAGGTCCCGGACAAGCTTTTGGATCATACAAGT
GTCACACATCTTTTCCCAATCACAAAGTACCTTGGATTGCTGGCAACTGG
AATGATAGCTGATGCAAGGACATTGGTTCAGCAGGCAAGATATGAAGCCG
CTGAGTTTCGCTTCAAATATGGATATGAAATGCCTGTGGATGTGTTAGCC
AAATGGTAAGTTTTCATATCCTTTTAAGTTGAATTCTAGTTTGCTTGTTT
AGTATTCGATATTTTCTGCAAATTGTTGACCGAACATTGCCTTTTTCCTT
ACTCATTTTTTGTCACTTTACTGCTTAAGTTTTGGTTAAATGTTGCAGTA
CTACTATCTGAAAAACAGTTATGTTAATTTCCTTTCATGTACAGGATTGC
AGACAAATCACAAGTATATACTCAACATGCTTATATGAGACCACTTGGTG
TAGTTGCTATGGTTTTGAGTATTGACGAAGAATGTGGACCTCGCCTCTTT
AAGTGTGACCCTGCTGGCCATTTCTTTGGCCACAAGGCAACAAGTGCTGG
ATTGAAGGAGCAAGAGGCAATTAATTTCTTGGAGAAGAGATGAAGAATGA
TCCTGCGTTTACCTTTCAGAAACTGTGCAGACTGCAATTTCCCACCTGCA
TCAGTCCCTGCAGAGGATTTTAGGCNAGTGAAATTGANNGTTGCGTGNTG
AGCAAGGAGAATCCAGAATCAGAGTTTTGTCCATCGAGGAGATCGATGAG
CCTTGACTGCTATAGGTGACGAGATTAGGAGGTGGTTCACGCCCATCATA
ATGCTGAAACCAAAAACAAATGCTTTC
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