EY728216

Overview
NameEY728216
Unique NameEY728216
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length585
Libraries
Library NameType
Sweet orange fruit, development stadium (5 of 6)cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12570 contig Csv1_Contig12570:446..1030. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY728216 vs. ExPASy Swiss-Prot
Match: Y5175_ARATH (UPF0706 protein At5g01750 OS=Arabidopsis thaliana GN=At5g01750 PE=1 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.903e-34
Identity = 67/102 (65.69%), Postives = 85/102 (83.33%), Query Frame = 3 
Query:    6 RPLLFTVERSSVIQLKTTLNVYLASNTKQDVCDFKIKGSWTEKSCVVYAGESNTIVAQMHKKTTVGSVLLNKDRFTVTVYPNIDYAFIVALIVILDDINGDD 311
            R LL+TV+RSS++QLKT L+V+L  N  +  CDF++KGSW E+SCVVYAGES+ IVAQMH+K TV SV L KD F+VTVYPN+DYAFI +L+VILDD+N +D
Sbjct:  113 RDLLYTVKRSSMLQLKTKLDVFLGHNKDEKRCDFRVKGSWLERSCVVYAGESDAIVAQMHRKHTVQSVFLGKDNFSVTVYPNVDYAFIASLVVILDDVNRED 214
The following BLAST results are available for this feature:
BLAST of EY728216 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
Y5175_ARATH2.903e-3465.69UPF0706 protein At5g01750 OS=Arabidopsis thaliana ... [more]
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Properties
Property NameValue
Genbank descriptionCS00-C3-704-001-A03-CT.F Sweet orange fruit, development stadium (5 of 6) Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY728216 ID=EY728216; Name=EY728216; organism=Citrus sinensis; type=EST; length=585bp
CCACGCGTCCGCTTCTCTTTACTGTGGAAAGATCTTCAGTGATCCAATTG
AAGACCACTTTGAACGTCTACCTGGCAAGTAACACCAAACAAGATGTTTG
CGATTTCAAGATCAAAGGCAGCTGGACTGAAAAATCTTGTGTTGTATATG
CTGGAGAATCAAACACAATTGTTGCCCAGATGCACAAAAAGACAACTGTG
GGCAGTGTCTTGCTCAACAAGGACAGGTTCACTGTGACAGTTTATCCGAA
CATAGACTATGCGTTTATAGTAGCCCTGATCGTGATCCTCGATGATATCA
ACGGTGATGATGATACGAGTGAGATAATTTAGATTTGAAATTCCTACTAT
AAAGTGAAAAATAGTGTGTCTGTTTGATGTAATTCAAGTAAGATGCTGTA
TCCGTGGCTTTGGTTTTCCTTGATTTCAAAACCCTTTGCAGTAGCCAGCT
AGTTAAAAGTACTTTTGCTTTCAAAAAAAGGCTATAGCTATAGCTGTTTG
TACGAGTCTTGCTTTTGTGGAGACTTTGTTGTTTGGAAGCCATTGGGCTT
GTAGTCAAAAAAAAAAAANNNNAAAAAAAAAANAA
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