EY753874

Overview
NameEY753874
Unique NameEY753874
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length596
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig12826 contig Csv1_Contig12826:899..1495. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH_RICCO (Thioredoxin H-type OS=Ricinus communis PE=3 SV=1)

HSP 1 Score: 141.739 bits (356), Expect = 2.576e-33
Identity = 69/103 (66.99%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   89 AEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            AEEGQVI CHTVE+ N QLQKG     LIVVDFT SWC PC  + P L+ELAKKLP V FLKVD DELK+V+ EWAVE+MPTF+  KE K++ ++VG KKDEL
Sbjct:    3 AEEGQVIGCHTVEAWNEQLQKGNDTKGLIVVDFTASWCGPCRFIAPFLAELAKKLPNVTFLKVDVDELKTVAHEWAVESMPTFMFLKEGKIMDKVVGAKKDEL 105          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH2_TOBAC (Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=1)

HSP 1 Score: 140.198 bits (352), Expect = 7.496e-33
Identity = 68/104 (65.38%), Postives = 80/104 (76.92%), Query Frame = 2
Query:   86 MAEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            MAEEGQVI  HTV++ N  LQKGI D KLIVVDFT SWC PC  +    +ELAKK+P V FLKVD DELKSV+ +WAVEAMPTF+  KE K++ ++VG KKDEL
Sbjct:    1 MAEEGQVIGVHTVDAWNEHLQKGIDDKKLIVVDFTASWCGPCKFIASFYAELAKKMPTVTFLKVDVDELKSVATDWAVEAMPTFMFLKEGKIVDKVVGAKKDEL 104          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH1_ARATH (Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TRX1 PE=1 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 2.848e-32
Identity = 64/103 (62.14%), Postives = 80/103 (77.67%), Query Frame = 2
Query:   89 AEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            +EEGQVI+CHTVE+ N QLQK      L+VVDFT SWC PC  + P  ++LAKKLP V+FLKVD DELKSV+ +WA++AMPTF+  KE K+L ++VG KKDEL
Sbjct:    3 SEEGQVIACHTVETWNEQLQKANESKTLVVVDFTASWCGPCRFIAPFFADLAKKLPNVLFLKVDTDELKSVASDWAIQAMPTFMFLKEGKILDKVVGAKKDEL 105          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH1_TOBAC (Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=1)

HSP 1 Score: 134.806 bits (338), Expect = 3.149e-31
Identity = 63/103 (61.17%), Postives = 78/103 (75.73%), Query Frame = 2
Query:   89 AEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            +EEGQV  CH VE  N   +KG+   KL+VVDFT SWC PC  + PIL+++AKK+P VIFLKVD DELK+VS EW+VEAMPTFV  K+ K + R+VG KK+EL
Sbjct:    9 SEEGQVFGCHKVEEWNEYFKKGVETKKLVVVDFTASWCGPCRFIAPILADIAKKMPHVIFLKVDVDELKTVSAEWSVEAMPTFVFIKDGKEVDRVVGAKKEEL 111          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH_FAGES (Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.013e-29
Identity = 63/105 (60.00%), Postives = 79/105 (75.24%), Query Frame = 2
Query:   86 MAEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDELL 400
            MAEE QVI+CHTV+  N + QK     KLIV+DFT SWC PC ++ P +SELAKK P V F KVD D+LK V+EE+ VEAMP+FV+ KE + ++RIVG +KDELL
Sbjct:    1 MAEEAQVIACHTVQEWNEKFQKAKDSGKLIVIDFTASWCGPCRVITPYVSELAKKFPHVAFFKVDVDDLKDVAEEYKVEAMPSFVILKEGQEVERIVGARKDELL 105          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH5_ARATH (Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TRX5 PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 3.603e-27
Identity = 54/104 (51.92%), Postives = 76/104 (73.08%), Query Frame = 2
Query:   86 MAEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            MA EG+VI+CHT+E  N +++      KLIV+DFT SWCPPC  + P+ +E+AKK   V+F K+D DEL++V++E+ VEAMPTFV  KE  ++ R+VG  KDE+
Sbjct:    1 MAGEGEVIACHTLEVWNEKVKDANESKKLIVIDFTASWCPPCRFIAPVFAEMAKKFTNVVFFKIDVDELQAVAQEFKVEAMPTFVFMKEGNIIDRVVGAAKDEI 104          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH4_ARATH (Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TRX4 PE=2 SV=2)

HSP 1 Score: 117.857 bits (294), Expect = 3.984e-26
Identity = 57/104 (54.81%), Postives = 76/104 (73.08%), Query Frame = 2
Query:   89 AEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKK-LPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            AEEGQVI CHT +    QL K    NKLIV+DFT SWCPPC ++ PI ++LAKK + + IF KVD DEL+SV++E+ VEAMPTFV  K  +++ ++VG  K++L
Sbjct:    3 AEEGQVIGCHTNDVWTVQLDKAKESNKLIVIDFTASWCPPCRMIAPIFNDLAKKFMSSAIFFKVDVDELQSVAKEFGVEAMPTFVFIKAGEVVDKLVGANKEDL 106          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH2_BRANA (Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE=2 SV=1)

HSP 1 Score: 117.087 bits (292), Expect = 6.796e-26
Identity = 54/104 (51.92%), Postives = 77/104 (74.04%), Query Frame = 2
Query:   89 AEEGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKK-LPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            AEEGQVI CH ++    QL      NKLIV+DFT SWCPPC ++ P+ ++LAKK + + IF KVD DEL++V++E+ VEAMPTFVL K+  ++ ++VG +K++L
Sbjct:    3 AEEGQVIGCHEIDVWAVQLDTAKQSNKLIVIDFTASWCPPCRMIAPVFADLAKKFMSSAIFFKVDVDELQNVAQEFGVEAMPTFVLIKDGNVVDKVVGARKEDL 106          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH_PICMA (Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.159e-25
Identity = 50/101 (49.50%), Postives = 71/101 (70.30%), Query Frame = 2
Query:   95 EGQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            EG V +CH+ E    +LQ+ I   +L+ VDFT +WC PC ++ P+  EL+KK P + FLKVD DEL+ V++EW VEAMPTF+  K+ K + ++VG KKD+L
Sbjct:    3 EGNVFACHSTEGWRSKLQEAIDTKRLVAVDFTATWCGPCRVIGPVFVELSKKFPEIFFLKVDVDELRDVAQEWDVEAMPTFIFIKDGKAVDKVVGAKKDDL 103          
BLAST of EY753874 vs. ExPASy Swiss-Prot
Match: TRXH_WHEAT (Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3)

HSP 1 Score: 115.931 bits (289), Expect = 1.514e-25
Identity = 53/100 (53.00%), Postives = 74/100 (74.00%), Query Frame = 2
Query:   98 GQVISCHTVES*NYQLQKGIADNKLIVVDFTDSWCPPCMLMYPILSELAKKLPAVIFLKVDADELKSVSEEWAVEAMPTFVLTKECKLLQRIVGTKKDEL 397
            G+VIS H++E    Q+++  A  KL+V+DFT SWC PC +M PI ++LAKK PA +FLKVD DELK ++E+++VEAMPTF+  KE  +  R+VG  K+EL
Sbjct:   18 GEVISVHSLEQWTMQIEEANAAKKLVVIDFTASWCGPCRIMAPIFADLAKKFPAAVFLKVDVDELKPIAEQFSVEAMPTFLFMKEGDVKDRVVGAIKEEL 117          
The following BLAST results are available for this feature:
BLAST of EY753874 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
TRXH_RICCO2.576e-3366.99Thioredoxin H-type OS=Ricinus communis PE=3 SV=1[more]
TRXH2_TOBAC7.496e-3365.38Thioredoxin H-type 2 OS=Nicotiana tabacum PE=3 SV=... [more]
TRXH1_ARATH2.848e-3262.14Thioredoxin H-type 1 OS=Arabidopsis thaliana GN=TR... [more]
TRXH1_TOBAC3.149e-3161.17Thioredoxin H-type 1 OS=Nicotiana tabacum PE=2 SV=... [more]
TRXH_FAGES1.013e-2960.00Thioredoxin H-type OS=Fagopyrum esculentum PE=3 SV... [more]
TRXH5_ARATH3.603e-2751.92Thioredoxin H-type 5 OS=Arabidopsis thaliana GN=TR... [more]
TRXH4_ARATH3.984e-2654.81Thioredoxin H-type 4 OS=Arabidopsis thaliana GN=TR... [more]
TRXH2_BRANA6.796e-2651.92Thioredoxin H-type 2 OS=Brassica napus GN=THL-2 PE... [more]
TRXH_PICMA1.159e-2549.50Thioredoxin H-type OS=Picea mariana GN=SB09 PE=2 S... [more]
TRXH_WHEAT1.514e-2553.00Thioredoxin H-type OS=Triticum aestivum PE=1 SV=3[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-H09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753874 ID=EY753874; Name=EY753874; organism=Citrus sinensis; type=EST; length=596bp
GNTCCGGNATTCCAAAGCCGACCCACGCGTCCGATATTAAATATATCAGA
ACAGACAACTAATTGAACTTGGGATCATAATTAAGATGGCCGAGGAGGGA
CAAGTGATCAGCTGCCACACTGTTGAATCCTGAAACTATCAGCTCCAAAA
GGGCATTGCGGACAACAAACTGATAGTGGTGGATTTTACGGATTCATGGT
GCCCGCCATGCATGTTGATGTATCCAATTTTGAGTGAATTGGCAAAGAAG
CTGCCCGCTGTCATATTCTTGAAAGTGGATGCTGATGAATTGAAGTCCGT
CTCTGAGGAATGGGCTGTGGAAGCCATGCCTACCTTTGTACTGACAAAAG
AATGCAAACTCCTGCAGAGGATTGTGGGAACGAAAAAAGATGAACTGCTG
CTGGCTGACCAAAACACCCAACAACTGTTGAGAATGCAACTACTGCTAAT
GCTTGATTGATGCATACATGAATCTCATTGCTCTTTTATTGAAAGGTGCG
TGTTCGTGGATGCTTAATGTAACAATATGGTACCATGTTTAACAGGCCTG
TATATACGAATAAATGACAATCTTCTAGCACACAAAAGAACTACTA
back to top