EY753853

Overview
NameEY753853
Unique NameEY753853
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length825
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13131 contig Csv1_Contig13131:1..825. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of EY753853 vs. ExPASy Swiss-Prot
Match: ZN363_HUMAN (RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 4.207e-18
Identity = 42/89 (47.19%), Postives = 52/89 (58.43%), Query Frame = 2 
Query:    2 HASDKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 268
            H   + C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C+SYNT    G
Sbjct:  166 HLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCNDCNGRSTVQFHILGMKCKICESYNTAQAGG 253
[Close]
BLAST of EY753853 vs. ExPASy Swiss-Prot
Match: ZN363_MOUSE (RING finger and CHY zinc finger domain-containing protein 1 OS=Mus musculus GN=Rchy1 PE=1 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 7.177e-18
Identity = 42/89 (47.19%), Postives = 51/89 (57.30%), Query Frame = 2 
Query:    2 HASDKNCLKEMREHHQYACPICSKSVCDMSKVWEKYDREIAATPMPEAYLNKKVWILCNDCGKTSNVQFHVLAQKCPNCKSYNTRLTRG 268
            H   + C +EM +   Y CP+C  S  DM++ W + D E+A TPMP  Y N  V ILCNDC   S VQFH+L  KC  C SYNT    G
Sbjct:  166 HLLHRTCYEEMLKEG-YRCPLCMHSALDMTRYWRQLDTEVAQTPMPSEYQNVTVDILCNDCNGRSTVQFHILGMKCKLCDSYNTAQAGG 253
The following BLAST results are available for this feature:
BLAST of EY753853 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
ZN363_HUMAN4.207e-1847.19RING finger and CHY zinc finger domain-containing ... [more]
ZN363_MOUSE7.177e-1847.19RING finger and CHY zinc finger domain-containing ... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-F09-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753853 ID=EY753853; Name=EY753853; organism=Citrus sinensis; type=EST; length=825bp
CCACGCGTCCGACAAAAATTGTTTGAAGGAGATGCGGGAACATCATCAAT
ATGCCTGTCCTATCTGCTCCAAGTCAGTCTGTGACATGTCCAAAGTATGG
GAGAAATATGACAGGGAGATAGCGGCTACTCCAATGCCAGAAGCTTACCT
AAATAAAAAGGTTTGGATCCTTTGCAATGACTGTGGTAAGACCTCTAATG
TCCAGTTCCATGTGCTGGCTCAGAAGTGCCCAAACTGCAAGTCCTACAAC
ACTCGCTTGACCAGGGGCTGAGCAAGTGGCAGTATTGTTAGCAATGATGG
TGATGGTGATGGGAACTCTCTGTTTGATGTGGATGGGTTCGGGTCTTAAT
TAATCTTTTCAACCATCTCAGCCACAGTCGTTACTCATTATGGGGTAGTG
GCTGCATCTACAACTTGCTCTGTGGGGAGCAGTTAGTCTTCCTCGTGGTG
TTTCTAGTCTAGCTCGTGGTGTTTGAATCTGCTCATGGNGTTGTTTTCTG
TCTTCTTGTTTTTCATTTCATTTGTTCTTTGTTGTATGTTTCCTCAAGGC
AACTGATGTAAATAGTCATAGCAACTAGCTCATACTGGTGCTGGGATGAA
CTTCTTACTCACTTTGCAAATAAGTAATGTTTTTCTTGTTTAGTTCATTT
AGTTTTCCTATATTTCACTTGGTGAGTATAGTTGTATGCGCTTATTTTGT
TTTCTATATTGCCTGTGTAGTCTATATTANNTGCCTTTTGCATGAGCTAC
AGTTTGTGCACCACTTGAGTGTCGTTATGAAAAAGTAGTNGAGGGAAAAA
AAAAAAAAAAAAAAAAAAAAAAGGG
back to top