EY753850

Overview
NameEY753850
Unique NameEY753850
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length751
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753850_ssr301 microsatellite EY753850_ssr301:301..312. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_BOVIN (DnaJ homolog subfamily B member 6 OS=Bos taurus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + ASA +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLGVQRHASAEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB3_MOUSE (DnaJ homolog subfamily B member 3 OS=Mus musculus GN=Dnajb3 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 6.379e-15
Identity = 41/65 (63.08%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ +QASA  IR AYRKLALKWHPD   K+P    EA RRF+Q+ +AY VLSD  KR VY
Sbjct:    4 YYEVLGVPRQASAEAIRKAYRKLALKWHPD---KNPEHKEEAERRFKQVAQAYEVLSDVRKREVY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_CHICK (DnaJ homolog subfamily B member 6 OS=Gallus gallus GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.088e-14
Identity = 39/65 (60.00%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ K ASA +I+ AYRKLALKWHPD   K+P    EA ++F+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLGVQKHASAEDIKKAYRKLALKWHPD---KNPENKEEAEQQFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_PONAB (DnaJ homolog subfamily B member 6 OS=Pongo abelii GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_MACFA (DnaJ homolog subfamily B member 6 OS=Macaca fascicularis GN=DNAJB6 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_HUMAN (DnaJ homolog subfamily B member 6 OS=Homo sapiens GN=DNAJB6 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 38/65 (58.46%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA R+F+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLGVQRHASPEDIKKAYRKLALKWHPD---KNPENKEEAERKFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJ6A_XENLA (DnaJ homolog subfamily B member 6-A OS=Xenopus laevis GN=dnajb6-A PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.424e-14
Identity = 37/65 (56.92%), Postives = 48/65 (73.85%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + ASA +I+ AYR+LALKWHPD   K+P    EA RRF+++ EAY VLSD+ KR +Y
Sbjct:    4 YYEVLGVQRNASADDIKKAYRRLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB6_XENTR (DnaJ homolog subfamily B member 6 OS=Xenopus tropicalis GN=dnajb6 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 37/65 (56.92%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VLG+ + AS  +I+ AYRKLALKWHPD   K+P    EA RRF+++ EAY VLSD+ KR +Y
Sbjct:    4 YYDVLGVQRNASPEDIKKAYRKLALKWHPD---KNPDNKDEAERRFKEVAEAYEVLSDSKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB3_HUMAN (DnaJ homolog subfamily B member 3 OS=Homo sapiens GN=DNAJB3 PE=1 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 4.135e-14
Identity = 39/65 (60.00%), Postives = 47/65 (72.31%), Query Frame = 2
Query:   80 YYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            YY VL + +QAS+  I+ AYRKLALKWHPD   K+P    EA RRF+Q+ EAY VLSDA KR +Y
Sbjct:    4 YYEVLDVPRQASSEAIKKAYRKLALKWHPD---KNPENKEEAERRFKQVAEAYEVLSDAKKRDIY 65          
BLAST of EY753850 vs. ExPASy Swiss-Prot
Match: DNJB3_MACFU (DnaJ homolog subfamily B member 3 OS=Macaca fuscata fuscata GN=DNAJB3 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 9.212e-14
Identity = 40/67 (59.70%), Postives = 46/67 (68.66%), Query Frame = 2
Query:   74 ACYYSVLGLHKQASASEIRDAYRKLALKWHPDRWMKDPTAAGEANRRFQQIQEAYSVLSDAAKRTVY 274
            A YY VLG+  Q    +I+ AYRKLALKWHPD   K+P    EA RRF+Q+ EAY VLSDA KR VY
Sbjct:    2 ANYYEVLGVQVQRFPEDIKKAYRKLALKWHPD---KNPDNKEEAERRFKQVAEAYEVLSDAKKRDVY 65          
The following BLAST results are available for this feature:
BLAST of EY753850 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 62
Match NameE-valueIdentityDescription
DNJB6_BOVIN6.379e-1560.00DnaJ homolog subfamily B member 6 OS=Bos taurus GN... [more]
DNJB3_MOUSE6.379e-1563.08DnaJ homolog subfamily B member 3 OS=Mus musculus ... [more]
DNJB6_CHICK1.088e-1460.00DnaJ homolog subfamily B member 6 OS=Gallus gallus... [more]
DNJB6_PONAB2.424e-1458.46DnaJ homolog subfamily B member 6 OS=Pongo abelii ... [more]
DNJB6_MACFA2.424e-1458.46DnaJ homolog subfamily B member 6 OS=Macaca fascic... [more]
DNJB6_HUMAN2.424e-1458.46DnaJ homolog subfamily B member 6 OS=Homo sapiens ... [more]
DNJ6A_XENLA2.424e-1456.92DnaJ homolog subfamily B member 6-A OS=Xenopus lae... [more]
DNJB6_XENTR4.135e-1456.92DnaJ homolog subfamily B member 6 OS=Xenopus tropi... [more]
DNJB3_HUMAN4.135e-1460.00DnaJ homolog subfamily B member 3 OS=Homo sapiens ... [more]
DNJB3_MACFU9.212e-1459.70DnaJ homolog subfamily B member 3 OS=Macaca fuscat... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-F06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753850 ID=EY753850; Name=EY753850; organism=Citrus sinensis; type=EST; length=751bp
CTTAAAAAATTTAAAAAAAAAAAAACCCTCAATCGCGCTCTTGAAACTAT
CATTAAAGATGTCCGATACCGGGGCCTGTTACTACTCCGTGCTCGGATTA
CATAAACAGGCCTCTGCATCTGAAATTCGGGATGCTTACAGGAAGCTCGC
TCTGAAATGGCATCCAGACAGATGGATGAAAGATCCCACAGCAGCTGGAG
AAGCCAACCGGCGATTCCAGCAAATTCAAGAGGCTTATTCAGTTTTATCA
GATGCTGCAAAGAGAACAGTTTATGATGCTGGATTGCTTAGCCTCCTCGC
TGATGATGATGACGAAGTGAGTTTCTGCTAATTTTGTGTATTCATTATGT
ACATGGTTTTTCTTCTTTTGATGGATATCTACTGAATCGTGGTTATGCTG
TGCAATTGTGGAAGCAGGAGTTTTGTGATTTCATGCAAGAAATGGCTTTG
ATGATGGAAAGTGTAAGCCCACAGGAGGGATACACTTTGGAGCATCTTCA
AGGATTGTTAACGGACATGATTGCGAATGAACAAAGAATCGGATTTGGAT
TTGCCGACGGTTGTGATTCTCATTTTCAATCCGCTAGAAAAAAGGGCTCG
TGTTAGCCAGATGAAGTTTCATATTTGTGTAACTCGATTTCTGCCCGCAG
GCTTAGTGCATTATATTCTTTTTGCCCTGTTTTGTGTGAAATGGGAAGAT
GTATATCATCTTATCAAGAAGTGATGATGATCCAAAAAAAAAAAAAAGGG
G
back to top