EY753828

Overview
NameEY753828
Unique NameEY753828
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length889
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753828_ssr501 microsatellite EY753828_ssr501:501..512. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig5404 contig Csv1_Contig5404:673..1562. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753828 vs. ExPASy Swiss-Prot
Match: MGP_ARATH (Zinc finger protein MAGPIE OS=Arabidopsis thaliana GN=MGP PE=1 SV=1)

HSP 1 Score: 241.891 bits (616), Expect = 3.686e-63
Identity = 110/139 (79.14%), Postives = 117/139 (84.17%), Query Frame = 3
Query:    3 MVTNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESAR 419
            M TNRFLCEIC KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCPE +CVHH P+RALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTREY+CDCG +FSRRDSFITHRAFCD LAEE+AR
Sbjct:   65 MATNRFLCEICGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKSCVHHHPTRALGDLTGIKKHFCRKHGEKKWKCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAR 203          
BLAST of EY753828 vs. ExPASy Swiss-Prot
Match: NUC_ARATH (Zinc finger protein NUTCRACKER OS=Arabidopsis thaliana GN=NUC PE=2 SV=1)

HSP 1 Score: 241.121 bits (614), Expect = 6.287e-63
Identity = 111/146 (76.03%), Postives = 119/146 (81.51%), Query Frame = 3
Query:    3 MVTNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPL 440
            M TNRFLCE+C KGFQRDQNLQLHRRGHNLPWKLKQRT+K  RK+VYVCPE TCVHH  SRALGDLTGIKKHF RKHG            YAVQSDWKAHSK CGTREY+CDCG +FSRRDSFITHRAFCD LAEE+A+   V+ L
Sbjct:   61 MATNRFLCEVCGKGFQRDQNLQLHRRGHNLPWKLKQRTSKEVRKRVYVCPEKTCVHHHSSRALGDLTGIKKHFCRKHGEKKWTCEKCAKRYAVQSDWKAHSKTCGTREYRCDCGTIFSRRDSFITHRAFCDALAEETAKINAVSHL 206          
BLAST of EY753828 vs. ExPASy Swiss-Prot
Match: JKD_ARATH (Zinc finger protein JACKDAW OS=Arabidopsis thaliana GN=JKD PE=1 SV=1)

HSP 1 Score: 235.728 bits (600), Expect = 2.641e-61
Identity = 113/167 (67.66%), Postives = 127/167 (76.05%), Query Frame = 3
Query:    3 MVTNRFLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNK-VERKKVYVCPEPTCVHHDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITV---NPLFSPSQQQPNSSATHMLN 491
            M TNRF+CEICNKGFQRDQNLQLHRRGHNLPWKLKQR+ + V +KKVY+CP  TCVHHD SRALGDLTGIKKH+SRKHG            YAVQSDWKAH+K CGTREYKCDCG LFSR+DSFITHRAFCD L EE AR  ++   NP+ S +     + +  M N
Sbjct:   77 MATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRSKQEVIKKKVYICPIKTCVHHDASRALGDLTGIKKHYSRKHGEKKWKCEKCSKKYAVQSDWKAHAKTCGTREYKCDCGTLFSRKDSFITHRAFCDALTEEGARMSSLSNNNPVISTTNLNFGNESNVMNN 243          
BLAST of EY753828 vs. ExPASy Swiss-Prot
Match: STOP1_ARATH (Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Arabidopsis thaliana GN=STOP1 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.736e-12
Identity = 43/135 (31.85%), Postives = 59/135 (43.70%), Query Frame = 3
Query:   24 CEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV----------YVCPEPTC---VHHDPSRALGDLTGIKKHFSRKH-GXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRA 386
            C IC KGF+RD NL++H RGH   +K      K  ++ V          Y CP   C     H   + L  +  +K H+ R H              ++V +D K H K CG  ++ C CG  FSR+D    H A
Sbjct:  246 CTICGKGFKRDANLRMHMRGHGDEYKTAAALAKPNKESVPGSEPMLIKRYSCPFLGCKRNKEHKKFQPLKTILCVKNHYKRTHCDKSFTCSRCHTKKFSVIADLKTHEKHCGKNKWLCSCGTTFSRKDKLFGHIA 380          
BLAST of EY753828 vs. ExPASy Swiss-Prot
Match: TT1_ARATH (Protein TRANSPARENT TESTA 1 OS=Arabidopsis thaliana GN=TT1 PE=2 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 3.274e-11
Identity = 52/167 (31.14%), Postives = 69/167 (41.32%), Query Frame = 3
Query:   18 FLCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTNKVERKKV------YVCPEPTCVH--HDPSRALGDLTGIKKHFSRKHGXXXXXXXXXXXXYAVQSDWKAHSKICGTREYKCDCGKLFSRRDSFITHRAFCDVLAEESARTITVNPLFSPSQQQPNSSATHMLNF 494
            F C +C K F R  NLQ+H  GH   ++    + K  + +       Y C E    H  H  S+ L D   ++ H+ RKHG             AV+ DW+ H K CG R + C CG  F  + S   H     V A  S        LF   +Q  NSS +  L F
Sbjct:  145 FSCHVCFKTFNRYNNLQMHMWGHGSQYRKGPESLKGTQPRAMLGIPCYCCVEGCRNHIDHPRSKPLKDFRTLQTHYKRKHGHKPFSCRLCGKLLAVKGDWRTHEKNCGKR-WVCVCGSDFKHKRSLKDH-----VKAFGSGHGPYPTGLF--EEQASNSSVSETLFF 303          
The following BLAST results are available for this feature:
BLAST of EY753828 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
MGP_ARATH3.686e-6379.14Zinc finger protein MAGPIE OS=Arabidopsis thaliana... [more]
NUC_ARATH6.287e-6376.03Zinc finger protein NUTCRACKER OS=Arabidopsis thal... [more]
JKD_ARATH2.641e-6167.66Zinc finger protein JACKDAW OS=Arabidopsis thalian... [more]
STOP1_ARATH1.736e-1231.85Protein SENSITIVE TO PROTON RHIZOTOXICITY 1 OS=Ara... [more]
TT1_ARATH3.274e-1131.14Protein TRANSPARENT TESTA 1 OS=Arabidopsis thalian... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-D05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753828 ID=EY753828; Name=EY753828; organism=Citrus sinensis; type=EST; length=889bp
TGATGGTCACAAACAGATTCTTATGTGAGATCTGTAACAAGGGGTTTCAA
AGAGACCAGAATCTTCAGCTTCATAGAAGAGGACATAACCTGCCGTGGAA
GTTAAAGCAAAGAACAAACAAAGTGGAGAGGAAGAAGGTTTATGTCTGTC
CTGAGCCCACATGTGTTCATCATGATCCATCAAGGGCTCTTGGGGACCTC
ACTGGGATTAAGAAGCACTTTAGCAGAAAGCATGGTGAAAAAAAGTGGAA
ATGTGAAAAGTGCTCTAAGAAATATGCAGTTCAATCAGATTGGAAAGCTC
ACTCCAAGATTTGTGGCACAAGAGAGTATAAATGTGACTGCGGAAAACTT
TTCTCTAGAAGGGACAGTTTCATCACCCACAGAGCCTTCTGTGACGTTTT
AGCTGAAGAGAGTGCAAGGACAATAACAGTAAACCCACTTTTCTCTCCAT
CGCAACAACAACCAAATTCCTCGGCAACCCACATGTTGAATTTCCCTTCC
CATCATCATCATCAGCTCCAAAGCCAAGGCCTCCAAGCCCTACAACTACA
AGCCGTGAAAATAGAAGACAACAATCAGCAGCACCATATTCCACCTTGGT
TAGCTTGCCCTTCTTCAATTGACCTCTCTTCACAGTTATTTTCAGGAAAC
ATTTTTTCACGGTCTTTACTTCACAACGAAAACCAAAGCGCTAGCCCTAG
CCCTAACCCTATTCTACTTCGTTCGCACCATTTGAGCCACCCGGCACCAC
AGGTTCACAACACACGTCTGGCACAGCACTTCTGCAAAAAAGCAGCACAA
TGGGGGCGACTATGAGCCACAGCCATCTGCATTACCTGCACCGTGCTTAG
AGTACCAGTACCCACCAACTCATACATGCCTGCTGGNTC
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