EY753818

Overview
NameEY753818
Unique NameEY753818
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length864
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753818_ssr252 microsatellite EY753818_ssr252:252..263. BLAST: Citrus ESTs to Prunus persica proteins V1
EY753818_ssr304 microsatellite EY753818_ssr304:304..319. BLAST: Citrus ESTs to Prunus persica proteins V1
Csv1_Contig13129 contig Csv1_Contig13129:1..865. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of EY753818 vs. ExPASy Swiss-Prot
Match: CCA1_ARATH (Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.829e-12
Identity = 33/39 (84.62%), Postives = 36/39 (92.31%), Query Frame = 3 
Query:  618 MDTYSSGEDLVLKTRKPYTITKQRERWTEGEHNRFLRAL 734
            M+T SSGEDLV+KTRKPYTITKQRERWTE EHNRF+ AL
Sbjct:    1 METNSSGEDLVIKTRKPYTITKQRERWTEEEHNRFIEAL 39
The following BLAST results are available for this feature:
BLAST of EY753818 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 1
Match NameE-valueIdentityDescription
CCA1_ARATH2.829e-1284.62Protein CCA1 OS=Arabidopsis thaliana GN=CCA1 PE=1 ... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-C05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753818 ID=EY753818; Name=EY753818; organism=Citrus sinensis; type=EST; length=864bp
TCATTTATCTAGATAATTTAAACAAATAGTTTTTTTTTTGTAAACTGTTT
CCGATTCAGATCCACCGTTGCCGGTAATCATGATTCCTCCGGCAAGTCGC
AGGTGAATTCTGTTCATGCGCTCTATCGATGCAGCCGGGCTTCTAGTACA
TCATGGCTTTCTCGAAGGGTTTTGGCATCTACGGGTTCGTTTTGGTGAGG
ATTCTGAATAAAGGAATTTTCTTTTAAGAGAAGCGTCTCTGTCTCTGTCT
GTCTCTCTCTCTCTGTTCTGGTGGATTCTTAATATTTCACAAAGAACTTG
TTATTATTTATTTATTTATTGCCCATTTATTTTACTCCTTAAGCACTCAT
ATAACAACACCTTATGTTATATCTTCAGTGAGTGTGAATTGGAATGCTTA
TTGTGCTGAAAAGAAACAGAGACGGATCTCTATCGATTGCTGTTGCTTTT
TTCTCTTTTGCAGTAGTGTTGCCTTATCAGGTTCTGTCAACCATTACTAT
AACAACGGCTTTGTCATTTGATACTGCAAGAAGAAATGAAGGGAGGGTTT
TGTTTTACCCACTGCTTGTTAGAGAGGATTTGAAGCAGCGCTAGCTGCTA
GCTGCCTGACTTTGGTTATGGACACCTACTCCTCTGGCGAAGACTTGGTT
CTTAAGACAAGGAAGCCATATACAATTACGAAGCAACGTGAACGATGGAC
AGAGGGAGAGCATAATAGGTTTTTAAGAGCGCTGAACTTTATGGCCGTGC
TTGCCACGCATAGAAAACTATAGGGACAAAGAAGCTGGGCAGACAGAGTC
ATCCCAAAAATTCTTTCCAATTGGAAAGGAGGCTCTTTTAAAGGGTTCTT
TGGTAAGCATTGAC
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