EY753810

Overview
NameEY753810
Unique NameEY753810
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:506..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 98.2117 bits (243), Expect = 1.870e-20
Identity = 43/47 (91.49%), Postives = 47/47 (100.00%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 142
            AF++TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:  128 AFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 3.190e-20
Identity = 42/48 (87.50%), Postives = 48/48 (100.00%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            AF++TFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:  127 AFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.639e-16
Identity = 35/46 (76.09%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    5 FVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 142
            F++TFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:  150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 78.5666 bits (192), Expect = 1.534e-14
Identity = 34/48 (70.83%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            + +L+ FS+FD+PVFWPILL Y+I+LF LTMRRQI HMIKYRYIP +I
Sbjct:  131 SLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 2.003e-14
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            + VL+ FS+FD+PVFWPILL Y+++LF LTMRRQI HM+KYRYIP +I
Sbjct:  131 SLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDI 178          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753810 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
The following BLAST results are available for this feature:
BLAST of EY753810 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH1.870e-2091.49Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH3.190e-2087.50Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH1.639e-1676.09Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_YEAST1.534e-1470.83Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SACPS2.003e-1468.75Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_PONAB9.941e-1471.74Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN9.941e-1471.74Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_BOVIN9.941e-1471.74Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT1.298e-1369.57Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE1.298e-1369.57Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-B07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753810 ID=EY753810; Name=EY753810; organism=Citrus sinensis; type=EST; length=471bp
AGCTTTTGTATTGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGC
CTATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGC
CAAATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAA
ACAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTG
GGGACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATG
GGGATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTT
TCAAGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAA
AGTTCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATG
TTTACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTAAAAAAAA
AAAAAAAAAAAAAAAANNNNG
back to top