EY753808

Overview
NameEY753808
Unique NameEY753808
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length881
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13092 contig Csv1_Contig13092:17..900. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23D_ARATH (Putative DNA repair protein RAD23-4 OS=Arabidopsis thaliana GN=RAD23-4 PE=2 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 7.670e-29
Identity = 82/188 (43.62%), Postives = 96/188 (51.06%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMXXXXXXXXXXXXALRAAY 705
            IFVKTL G++F++EVKP D V DVK  IETV+G++ YPAA+QMLI+QGKVLKD+TTLEEN V ENSF+VIML+K K      ST                           VP                                VYG AASNLVAG  LE  +QQILDM            ALRAA+
Sbjct:    3 IFVKTLSGSNFEIEVKPADKVSDVKTAIETVKGAE-YPAAKQMLIHQGKVLKDETTLEENNVVENSFIVIMLSKTKASPSGASTASAPAPSATQPQTVATPQVSAPTASVPVP-------------TSGTATAAAPATAASVQTDVYGQAASNLVAGTTLESTVQQILDMGGGSWDRDTVVRALRAAF 176          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23C_ARATH (Putative DNA repair protein RAD23-3 OS=Arabidopsis thaliana GN=RAD23-3 PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 4.971e-28
Identity = 60/84 (71.43%), Postives = 74/84 (88.10%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 393
            IFVKTLKGT F++EVKPED+V DVK  IE+VQG+DVYPAA+QMLI+QGKVLKD+TT+EENKVAENSF+VIM+ K+K  +   S+
Sbjct:    3 IFVKTLKGTHFEIEVKPEDSVVDVKKNIESVQGADVYPAAKQMLIHQGKVLKDETTIEENKVAENSFIVIMMNKSKPASAAASS 86          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_ARATH (Putative DNA repair protein RAD23-2 OS=Arabidopsis thaliana GN=RAD23-2 PE=2 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 2.642e-21
Identity = 65/186 (34.95%), Postives = 85/186 (45.70%), Query Frame = 1
Query:  148 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGSTRXXXXXXXXXXXXXXXXXXXXXXXXXXVPIXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGVYGHAASNLVAGNNLEGAIQQILDMXXXXXXXXXXXXALRAAY 705
            VKTLKG+ F++ V P DT+  VK  IE  Q  D YP  QQ+LI+ GKVLKD+TTL ENKV E  F+V+ML+K+K  +  G +                           VP                                 YG AAS LV+G+++E  +QQI++M            ALRAAY
Sbjct:    5 VKTLKGSHFEIRVLPTDTIMAVKKNIEDSQSKDNYPCGQQLLIHNGKVLKDETTLVENKVTEEGFLVVMLSKSKTASSAGPSSTQPTSTTTSTISSTTLAAPSTTQSIAVP----------------ASNSTPVQEQPTAQSDTYGQAASTLVSGSSIEQMVQQIMEMGGGSWDKETVTRALRAAY 174          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RAD23_ORYSJ (Probable DNA repair protein RAD23 OS=Oryza sativa subsp. japonica GN=RAD23 PE=1 SV=2)

HSP 1 Score: 100.523 bits (249), Expect = 1.311e-20
Identity = 51/76 (67.11%), Postives = 59/76 (77.63%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369
            I VKTLKG++F +EV     V DVK  IET QG  +YPA QQMLI+QGKVLKDDTTL+ENKV ENSF+VIML + K
Sbjct:    3 ISVKTLKGSTFQIEVDSAQKVADVKRIIETTQGQHIYPAEQQMLIHQGKVLKDDTTLDENKVLENSFLVIMLRQGK 78          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_ARATH (Putative DNA repair protein RAD23-1 OS=Arabidopsis thaliana GN=RAD23-1 PE=2 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 7.955e-18
Identity = 43/74 (58.11%), Postives = 55/74 (74.32%), Query Frame = 1
Query:  148 VKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369
            VKTLKG+ F++ V P DT+  VK  IE  QG D YP  QQ+LI+ GKVLKD+T+L ENKV E  F+V+ML+K+K
Sbjct:    5 VKTLKGSHFEIRVLPSDTIMAVKKNIEDSQGKDNYPCGQQLLIHNGKVLKDETSLVENKVTEEGFLVVMLSKSK 78          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_RAT (UV excision repair protein RAD23 homolog B OS=Rattus norvegicus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_MOUSE (UV excision repair protein RAD23 homolog B OS=Mus musculus GN=Rad23b PE=1 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 1.075e-14
Identity = 38/79 (48.10%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILSDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_HUMAN (UV excision repair protein RAD23 homolog B OS=Homo sapiens GN=RAD23B PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.834e-14
Identity = 37/76 (48.68%), Postives = 55/76 (72.37%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNK 369
            + +KTL+  +F +++ PE+TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K
Sbjct:    3 VTLKTLQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPK 78          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23B_BOVIN (UV excision repair protein RAD23 homolog B OS=Bos taurus GN=RAD23B PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 2.395e-14
Identity = 37/79 (46.84%), Postives = 56/79 (70.89%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPT 378
            + +KTL+  +F +++ P++TV  +K KIE+ +G D +P A Q LIY GK+L DDT L+E K+ E +FVV+M+TK K  T
Sbjct:    3 VTLKTLQQQTFKIDIDPDETVRALKEKIESEKGKDAFPVAGQKLIYAGKILNDDTALKEYKIDEKNFVVVMVTKPKAVT 81          
BLAST of EY753808 vs. ExPASy Swiss-Prot
Match: RD23A_HUMAN (UV excision repair protein RAD23 homolog A OS=Homo sapiens GN=RAD23A PE=1 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.717e-12
Identity = 35/84 (41.67%), Postives = 57/84 (67.86%), Query Frame = 1
Query:  142 IFVKTLKGTSFDVEVKPEDTVFDVKMKIETVQGSDVYPAAQQMLIYQGKVLKDDTTLEENKVAENSFVVIMLTKNKRPTGEGST 393
            I +KTL+  +F + ++P++TV  +K KIE  +G D +P A Q LIY GK+L DD  + + ++ E +FVV+M+TK K   G+G++
Sbjct:    5 ITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKTK--AGQGTS 86          
The following BLAST results are available for this feature:
BLAST of EY753808 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 12
Match NameE-valueIdentityDescription
RD23D_ARATH7.670e-2943.62Putative DNA repair protein RAD23-4 OS=Arabidopsis... [more]
RD23C_ARATH4.971e-2871.43Putative DNA repair protein RAD23-3 OS=Arabidopsis... [more]
RD23B_ARATH2.642e-2134.95Putative DNA repair protein RAD23-2 OS=Arabidopsis... [more]
RAD23_ORYSJ1.311e-2067.11Probable DNA repair protein RAD23 OS=Oryza sativa ... [more]
RD23A_ARATH7.955e-1858.11Putative DNA repair protein RAD23-1 OS=Arabidopsis... [more]
RD23B_RAT1.075e-1448.10UV excision repair protein RAD23 homolog B OS=Ratt... [more]
RD23B_MOUSE1.075e-1448.10UV excision repair protein RAD23 homolog B OS=Mus ... [more]
RD23B_HUMAN1.834e-1448.68UV excision repair protein RAD23 homolog B OS=Homo... [more]
RD23B_BOVIN2.395e-1446.84UV excision repair protein RAD23 homolog B OS=Bos ... [more]
RD23A_HUMAN1.717e-1241.67UV excision repair protein RAD23 homolog A OS=Homo... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-007-B05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753808 ID=EY753808; Name=EY753808; organism=Citrus sinensis; type=EST; length=881bp
TAACTTGTGCTTCGGTTTTCTCTCTCCGACTGTATCAATTATAGATAGAC
ATTGAAAACACCTTGCGGATCGGAAAACCAAATAAAATAGTTGAATTCGA
GAAGACCCAACGGAACGTAGAAAAAGAAGAAGATGATGAAGATTTTCGTT
AAAACTCTCAAAGGAACTTCTTTCGACGTCGAAGTGAAACCTGAAGACAC
GGTCTTTGATGTGAAAATGAAGATAGAAACTGTTCAAGGATCGGATGTTT
ATCCTGCTGCACAACAGATGCTGATTTATCAGGGGAAAGTCCTCAAAGAT
GATACTACACTGGAAGAGAACAAAGTAGCTGAAAATAGTTTTGTTGTTAT
TATGTTAACAAAGAATAAGAGACCAACTGGTGAAGGTTCAACTAGGTCAA
CTGCGCCTACAAAGGCTCCCCAGTCAAGTGCCCCAACCCCTGCAGCAACC
CCAGCAACAGCTCCTCAGACTGCCGTGCCAATCTCTACAGAGCCTACACC
TGCTCCTGCACCTGCTCCTACTCCTGCTCCTGCTTCTGCTTCTGTGTCAT
CAGTTTCTGCTACGTCAGAGTCTGGTGTGTATGGGCATGCTGCATCTAAT
CTGGTTGCTGGGAACAACTTGGAGGGAGCAATCCAGCAGATTCTTGATAT
GGGTGGAGGGACTTGGGATAGAGATACTGGTGNTCGTGCTCTTCGAGCTG
CTTATATAATCCTGAGAGGGCTGNTGAATATTATATTCTGGGAGTATTGC
TATATTTCATCATTCTTCACACATTTGTAACTCATTTAGGATGGAGCTTT
TGAATGAAATCTTTTGATGCGNTATGNCATCAGATGGTCTCTCATAATTG
CTCTAAGGGGGGAGGGTGTCAAAAAAAAAAA
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