EY753759

Overview
NameEY753759
Unique NameEY753759
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_CYAPA (60S ribosomal protein L13a OS=Cyanophora paradoxa PE=2 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 7.011e-28
Identity = 52/91 (57.14%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FL+ RM T P  GPFHFR+PA+I WR++RG+ P  T R +A+L RL AFEGV   YD + R+VIP AL V RL PG  FC+L RLA+ V W
Sbjct:   56 FLKKRMNTNPRRGPFHFRSPARILWRTIRGMIPHKTPRGAAALERLKAFEGVPPPYDKMKRMVIPQALRVLRLKPGRKFCVLGRLATEVGW 146          

HSP 2 Score: 41.5874 bits (96), Expect = 7.011e-28
Identity = 26/47 (55.32%), Postives = 29/47 (61.70%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            VVVD   HLLGRLA+  A ELL    VVAVR E I + G L R  +K
Sbjct:    6 VVVDCRGHLLGRLAATLAKELLNGQRVVAVRTEEINISGSLFRNKLK 52          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_SALTR (60S ribosomal protein L13a (Fragment) OS=Salmo trutta GN=rpl13a PE=2 SV=1)

HSP 1 Score: 97.0561 bits (240), Expect = 1.054e-25
Identity = 49/91 (53.85%), Postives = 59/91 (64.84%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+GV   YD   R+V+P AL + RL P   F LL RLA  V W
Sbjct:   43 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGVPPPYDKRKRMVVPAALKIVRLKPTRKFALLGRLAHEVGW 133          

HSP 2 Score: 41.2022 bits (95), Expect = 1.054e-25
Identity = 22/39 (56.41%), Postives = 26/39 (66.67%), Query Frame = 1
Query:  148 LLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            LLGRLA+I A E+LL H VV VRCE I + G   R  +K
Sbjct:    1 LLGRLAAIVANEVLLGHKVVVVRCEGINISGNFYRNKLK 39          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_PONAB (60S ribosomal protein L13a OS=Pongo abelii GN=RPL13A PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.368e-25
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTSPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 1.368e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_BOVIN (60S ribosomal protein L13a OS=Bos taurus GN=RPL13A PE=2 SV=3)

HSP 1 Score: 95.5153 bits (236), Expect = 1.368e-25
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 1.368e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_MACFA (60S ribosomal protein L13a OS=Macaca fascicularis GN=RPL13A PE=2 SV=3)

HSP 1 Score: 95.1301 bits (235), Expect = 1.781e-25
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 1.781e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_HUMAN (60S ribosomal protein L13a OS=Homo sapiens GN=RPL13A PE=1 SV=2)

HSP 1 Score: 95.1301 bits (235), Expect = 1.781e-25
Identity = 48/91 (52.75%), Postives = 58/91 (63.74%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL  F+G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALDRLKVFDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 1.781e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_RAT (60S ribosomal protein L13a OS=Rattus norvegicus GN=Rpl13a PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 3.927e-25
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL   +G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 43.1282 bits (100), Expect = 3.927e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRSHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: RL13A_MOUSE (60S ribosomal protein L13a OS=Mus musculus GN=Rpl13a PE=1 SV=4)

HSP 1 Score: 93.2041 bits (230), Expect = 6.652e-25
Identity = 47/91 (51.65%), Postives = 57/91 (62.64%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P  GP+HFRAP++IFWR+VRG+ P  T R  A+L RL   +G+   YD   R+V+P AL V RL P   F  L RLA  V W
Sbjct:   57 FLRKRMNTNPSRGPYHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGRLAHEVGW 147          

HSP 2 Score: 42.3578 bits (98), Expect = 6.652e-25
Identity = 23/47 (48.94%), Postives = 30/47 (63.83%), Query Frame = 1
Query:  124 VVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVK 264
            +V+D   HLLGRLA+I A ++LL   VV VRCE I + G   R  +K
Sbjct:    7 LVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLK 53          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: R13A2_ARATH (60S ribosomal protein L13a-2 OS=Arabidopsis thaliana GN=RPL13AB PE=1 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 2.966e-23
Identity = 56/91 (61.54%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P HGP HFRAP+KIFWR+VRG+ P  T R +A+LARL  FEGV   YD V R+VIP AL V RL  G  +CLL RL+S V W
Sbjct:   62 FLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGVPPPYDKVKRMVIPDALKVLRLQAGHKYCLLGRLSSEVGW 152          

HSP 2 Score: 67.781 bits (164), Expect = 9.951e-11
Identity = 40/73 (54.79%), Postives = 44/73 (60.27%), Query Frame = 1
Query:  103 SGLCANPVVVDALLHLLGRLASIAAIELLLFHXVVAVRCEYICLCGGLVRPNVKCMRV--------PSHAHDH 297
            SG+C+  VVVDA  H+ GRLASI A ELL    VV VRCE ICL GGLVR  +K MR         PSH   H
Sbjct:    5 SGICSKRVVVDARHHMCGRLASIIAKELLNGQSVVVVRCEEICLSGGLVRQKMKYMRFLRKRMNTKPSHGPIH 77          
BLAST of EY753759 vs. ExPASy Swiss-Prot
Match: R13A3_ARATH (60S ribosomal protein L13a-3 OS=Arabidopsis thaliana GN=RPL13AC PE=2 SV=1)

HSP 1 Score: 108.612 bits (270), Expect = 5.060e-23
Identity = 54/91 (59.34%), Postives = 64/91 (70.33%), Query Frame = 2
Query:  275 FLRMRMTTLPFHGPFHFRAPAKIFWRSVRGLFPCTTLRVSASLARLWAFEGVLASYDPVLRLVIPVALVVSRLSPGPSFCLLCRLASVVWW 547
            FLR RM T P HGP HFRAP+KIFWR+VRG+ P  T R +A+LARL  FEG+   YD + R+VIP AL V RL  G  +CLL RL+S V W
Sbjct:   62 FLRKRMNTKPSHGPIHFRAPSKIFWRTVRGMIPHKTKRGAAALARLKVFEGIPPPYDKIKRMVIPDALKVLRLQSGHKYCLLGRLSSEVGW 152          
The following BLAST results are available for this feature:
BLAST of EY753759 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 26
Match NameE-valueIdentityDescription
RL13A_CYAPA7.011e-2857.1460S ribosomal protein L13a OS=Cyanophora paradoxa ... [more]
RL13A_SALTR1.054e-2553.8560S ribosomal protein L13a (Fragment) OS=Salmo tru... [more]
RL13A_PONAB1.368e-2552.7560S ribosomal protein L13a OS=Pongo abelii GN=RPL1... [more]
RL13A_BOVIN1.368e-2552.7560S ribosomal protein L13a OS=Bos taurus GN=RPL13A... [more]
RL13A_MACFA1.781e-2552.7560S ribosomal protein L13a OS=Macaca fascicularis ... [more]
RL13A_HUMAN1.781e-2552.7560S ribosomal protein L13a OS=Homo sapiens GN=RPL1... [more]
RL13A_RAT3.927e-2551.6560S ribosomal protein L13a OS=Rattus norvegicus GN... [more]
RL13A_MOUSE6.652e-2551.6560S ribosomal protein L13a OS=Mus musculus GN=Rpl1... [more]
R13A2_ARATH2.966e-2361.5460S ribosomal protein L13a-2 OS=Arabidopsis thalia... [more]
R13A3_ARATH5.060e-2359.3460S ribosomal protein L13a-3 OS=Arabidopsis thalia... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E12-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753759 ID=EY753759; Name=EY753759; organism=Citrus sinensis; type=EST; length=909bp
GGNATTAAAAAACTCGACCCACGCGTCCGGGNGCATCTCGTTCCTGTNAG
TTGTGAAAAATCCTCCNATTTNTNTAGAGGGCTCTCCTGGTGGGGTCCGG
CATCGGGGCTCTGCGCGAATCCAGTGGTGGTGGACGCACTCCTTCACCTG
CTGGGGCGGCTGGCTTCCATCGCGGCCATCGAGCTTCTCTTGTTTCATNN
AGTCGTCGCGGTCCGCTGCGAATACATTTGCTTGTGCGGCGGCCTCGTCC
GCCCGAATGTGAAGTGCATGCGTGTTCCTTCGCATGCGCATGACCACGCT
GCCTTTTCACGGTCCCTTTCACTTCCGCGCCCCTGCCAAGATCTTCTGGC
GCTCCGTGCGTGGGCTGTTTCCGTGTACGACCCTGCGGGTATCTGCTTCT
CTTGCTCGCTTGTGGGCATTTGAGGGGGTCCTTGCATCTTATGACCCCGT
GTTGAGACTGGTTATCCCCGTCGCTCTCGTGGTTTCGCGGCTTTCCCCCG
GTCCCTCGTTCTGCCTGTTGTGCCGCCTGGCCTCCGTGGTGTGGTGGTAC
TGTTCTGTCTCCCTCTGGGAGCTCGGGTTGACATTTGGGACCTGTTTCAT
GTGGCCTCTGTGGCGAAGACTCCGCTCTTCTTTCTTAGGGCCTAAGCTGC
GAAGGTTGTCCTTTAGATTCTTGTCTCGCTNTTGGGCCTCCTTGCCCCTG
CCTTTTTTGACCCGTCCTCTCGTTGGCTACCCTTCTGGTGGGCCTGGTCT
TGGCTTCCCTTGGGCTTTCGCTTTGTTCCNGCTTTTTCTTGCTCGGATTT
GTTCCGCTGGGTGATTTTCCTTCTTCCTCCCCCCTCTACTGTGGTTGTCA
AATGTTGCGTTTCTCTCTTAATTTCCGCGGGTTAAACCTTACCTGAAAAA
GGGCGCCTT
back to top