EY753755

Overview
NameEY753755
Unique NameEY753755
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length935
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753755_ssr851 microsatellite EY753755_ssr851:851..862. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRP16_HUMAN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Homo sapiens GN=DHX38 PE=1 SV=2)

HSP 1 Score: 154.451 bits (389), Expect = 8.351e-37
Identity = 86/186 (46.24%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            LPI   +++++     N + +V+GETGSGK +  +Q LH  G T  G IG                  E+G  LGEEVGYAIRFED TSE TLIK++TDG LLRE L   +L   S +I DEAHERSLNTD+L GL+ R    R S+ K + TSAT+D EK +    + P  + PG+  PV+IL S
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSENTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLL-REVVARRSDLKLIVTSATMDAEKFAAFFGNVPIFHIPGRTFPVDILFS 716          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRP16_BOVIN (Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP16 OS=Bos taurus GN=DHX38 PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 8.351e-37
Identity = 86/186 (46.24%), Postives = 111/186 (59.68%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            LPI   +++++     N + +V+GETGSGK +  +Q LH  G T  G IG                  E+G  LGEEVGYAIRFED TSE TLIK++TDG LLRE L   +L   S +I DEAHERSLNTD+L GL+ R    R S+ K + TSAT+D EK +    + P  + PG+  PV+IL S
Sbjct:  532 LPIFAVQQELLTIIRDNSIVIVVGETGSGKTTQLTQYLHEDGYTDYGMIGCTQPRRVAAMSVAKRVSEEMGGNLGEEVGYAIRFEDCTSESTLIKYMTDGILLRESLREADLDHYSAIIMDEAHERSLNTDVLFGLL-REVVARRSDLKLIVTSATMDAEKFASFFGNVPIFHIPGRTFPVDILFS 716          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX8_MOUSE (ATP-dependent RNA helicase DHX8 OS=Mus musculus GN=Dhx8 PE=2 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.145e-36
Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   92 NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            +LPI   +E++V+    N + +VIGETGSGK +  +Q L   G T  G IG                  E G  LG+EVGY IRFED TS  T+IK++TDG LLRE L +P+L+  ++++ DEAHER+++TD+L GL+K++   R  + K + TSATLD  K S+  +  P    PG+  PVEIL++
Sbjct:  588 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYT 773          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX8_HUMAN (ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN=DHX8 PE=1 SV=1)

HSP 1 Score: 152.14 bits (383), Expect = 4.145e-36
Identity = 80/187 (42.78%), Postives = 114/187 (60.96%), Query Frame = 2
Query:   92 NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            +LPI   +E++V+    N + +VIGETGSGK +  +Q L   G T  G IG                  E G  LG+EVGY IRFED TS  T+IK++TDG LLRE L +P+L+  ++++ DEAHER+++TD+L GL+K++   R  + K + TSATLD  K S+  +  P    PG+  PVEIL++
Sbjct:  564 SLPIYKLKEQLVQAVHDNQILIVIGETGSGKTTQITQYLAEAGYTSRGKIGCTQPRRVAAMSVAKRVSEEFGCCLGQEVGYTIRFEDCTSPETVIKYMTDGMLLRECLIDPDLTQYAIIMLDEAHERTIHTDVLFGLLKKTVQKR-QDMKLIVTSATLDAVKFSQYFYEAPIFTIPGRTYPVEILYT 749          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX8_ARATH (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase OS=Arabidopsis thaliana GN=At3g26560 PE=1 SV=2)

HSP 1 Score: 152.14 bits (383), Expect = 4.145e-36
Identity = 87/197 (44.16%), Postives = 116/197 (58.88%), Query Frame = 2
Query:   62 SKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            SK  +     +LPI   ++++++    N V VVIGETGSGK +  +Q L   G T  G IG                  E G RLGEEVGYAIRFED T   T+IK++TDG LLREIL +  LS  SV++ DEAHER+++TD+L GL+K+    R  + + + TSATLD EK S   F+      PG+  PVEIL++
Sbjct:  504 SKLSIQEQRESLPIYKLKKELIQAVHDNQVLVVIGETGSGKTTQVTQYLAEAGYTTKGKIGCTQPRRVAAMSVAKRVAEEFGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILIDENLSQYSVIMLDEAHERTIHTDVLFGLLKKLMK-RRLDLRLIVTSATLDAEKFSGYFFNCNIFTIPGRTFPVEILYT 699          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: PRP16_SCHPO (Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 OS=Schizosaccharomyces pombe GN=prp16 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.513e-34
Identity = 83/191 (43.46%), Postives = 110/191 (57.59%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTAASS 667
            LP     E+++     N V +V+GETGSGK +  +Q L+  G  R+G IG                  E+GVRLG  VGY+IRFED T   T+IK++TDG LLRE L    L   SV+I DEAHERSLNTDIL+GL+K+  + R  + K L TSAT++ +K S      P    PG+  PV+I+ + A  S
Sbjct:  492 LPAFAVREQLLSVIRDNQVLIVVGETGSGKTTQLAQFLYEDGYHRNGMIGCTQPRRVAAMSVAKRVSEEMGVRLGSTVGYSIRFEDVTGPDTVIKYMTDGVLLRESLMQNNLEKYSVIIMDEAHERSLNTDILMGLLKKVLS-RRRDIKLLVTSATMNSQKFSDFFGGAPQFTIPGRTYPVDIMFAKAPCS 681          

HSP 2 Score: 21.557 bits (44), Expect = 1.513e-34
Identity = 8/17 (47.06%), Postives = 12/17 (70.59%), Query Frame = 3
Query:  681 SALQPALDIHAPRPAGD 731
            +A++  L IH  +PAGD
Sbjct:  686 AAVRQVLQIHLSQPAGD 702          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: MOG5_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-5 OS=Caenorhabditis elegans GN=mog-5 PE=2 SV=1)

HSP 1 Score: 146.362 bits (368), Expect = 2.274e-34
Identity = 85/203 (41.87%), Postives = 117/203 (57.64%), Query Frame = 2
Query:   71 RVNGSMA----NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHSTAASS 667
            R N SM     +LPI   ++ ++E    N + VV+GETGSGK +  +Q     G+ R G IG                  E G +LG +VGY IRFED TS+ T+IK++TDG LLRE L +P+LS  S+++ DEAHER+++TD+L GL+K +A  R    K + TSATLD  K S+     P    PG+  PVEIL++    S
Sbjct:  528 RTNLSMVEQRESLPIFALKKNLMEAMIDNQILVVVGETGSGKTTQMTQYAIEAGLGRRGKIGCTQPRRVAAMSVAKRVAEEYGCKLGTDVGYTIRFEDCTSQDTIIKYMTDGMLLRECLIDPDLSGYSLIMLDEAHERTIHTDVLFGLLKAAARKR-PELKLIITSATLDSVKFSEYFLEAPIFTIPGRTFPVEILYTREPES 729          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: MOG1_CAEEL (Probable pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1 OS=Caenorhabditis elegans GN=mog-1 PE=2 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 2.274e-34
Identity = 81/187 (43.32%), Postives = 112/187 (59.89%), Query Frame = 2
Query:   95 LPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLL-FHRPTLNAPGKLDPVEILHS 652
            LP+    +K++    +N V +++GETGSGK +  +Q L   G   SG IG                  E+GV LG++VGYAIRFED TSE+T+IK++TDG LLRE L +  L   S +I DEAHERSLNTD+L GL++     RA + K + TSAT+D +K +     + PT   PG+  PVE+ H+
Sbjct:  441 LPVFACRQKMMNVIRENNVVIIVGETGSGKTTQLAQYLLEDGFGDSGLIGCTQPRRVAAMSVARRVADEMGVDLGQDVGYAIRFEDCTSEKTIIKYMTDGILLRECLGDGSLDQYSAIIMDEAHERSLNTDVLFGLLREVIAKRA-DLKLIVTSATMDADKFADFFGGNCPTFTIPGRTFPVELFHA 626          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX16_DICDI (Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 OS=Dictyostelium discoideum GN=dhx16 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 3.879e-34
Identity = 75/178 (42.13%), Postives = 111/178 (62.36%), Query Frame = 2
Query:   92 NLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGK 625
            +LP+    E++++   +  V +++GETGSGK +   Q LH  G +++G IG                  E+G +LG EVGY+IRFED TS++T+++++TDG L+RE L+ P+L+  SVLI DEAHER+L+TDIL GL+K     R  + K L +SAT+D E+ S      PT N PG+
Sbjct:  466 SLPVYPYREQLIDAVREYQVLIIVGETGSGKTTQIPQYLHEAGFSKTGKIGCTQPRRVAAMSVAARVAEEVGCKLGNEVGYSIRFEDCTSQKTVLQYMTDGMLVREFLTAPDLASYSVLIIDEAHERTLHTDILFGLLKDITRFR-PDLKLLISSATMDAERFSDYFDGAPTFNIPGR 642          
BLAST of EY753755 vs. ExPASy Swiss-Prot
Match: DHX8_DICDI (ATP-dependent RNA helicase dhx8 OS=Dictyostelium discoideum GN=dhx8 PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 5.067e-34
Identity = 85/214 (39.72%), Postives = 119/214 (55.61%), Query Frame = 2
Query:   14 PRVRAIXSGA-LXWQKTSKPRVNGSMANLPILHSEEKIVETAEQNPVAVVIGETGSGKISLFSQILHRRGVTRSGSIGXXXXXXXXXXXXXXXXXXELGVRLGEEVGYAIRFEDRTSERTLIKHLTDGALLREILSNPELSPCSVLISDEAHERSLNTDILLGLVKRSANLRASNSKSLTTSATLDGEKASKLLFHRPTLNAPGKLDPVEILHS 652
            P  + +  G+ + + K +   +     +LPI    E  ++   ++ + VVIGETGSGK +  +Q L   G    G IG                  E G +LG+EVGYAIRFED TS  T+IK +TDG LLRE L +P LS  SV+I DEAHER+++TD+L GL+K++   R    K L TSATL+ EK SK   +      PG+  PV+I ++
Sbjct:  480 PEWKKVTQGSHIQYGKATSRSIKEQRESLPIFPLREAFLQAVSEHQLLVVIGETGSGKTTQMAQYLAEAGYGTRGKIGCTQPRRVAAMSVSKRVAEEFGCQLGQEVGYAIRFEDCTSPETIIKFMTDGILLRECLLDPNLSAYSVIILDEAHERTISTDVLFGLLKQALQ-RRPELKVLITSATLEAEKFSKYFMNAQLFIIPGRTFPVDIRYT 692          
The following BLAST results are available for this feature:
BLAST of EY753755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 66
Match NameE-valueIdentityDescription
PRP16_HUMAN8.351e-3746.24Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
PRP16_BOVIN8.351e-3746.24Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
DHX8_MOUSE4.145e-3642.78ATP-dependent RNA helicase DHX8 OS=Mus musculus GN... [more]
DHX8_HUMAN4.145e-3642.78ATP-dependent RNA helicase DHX8 OS=Homo sapiens GN... [more]
DHX8_ARATH4.145e-3644.16Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
PRP16_SCHPO1.513e-3443.46Pre-mRNA-splicing factor ATP-dependent RNA helicas... [more]
MOG5_CAEEL2.274e-3441.87Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
MOG1_CAEEL2.274e-3443.32Probable pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX16_DICDI3.879e-3442.13Putative pre-mRNA-splicing factor ATP-dependent RN... [more]
DHX8_DICDI5.067e-3439.72ATP-dependent RNA helicase dhx8 OS=Dictyostelium d... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753755 ID=EY753755; Name=EY753755; organism=Citrus sinensis; type=EST; length=935bp
TTCCAGGGCTGACCCACGCGTCCGCGCGATTNNGTCCGGGGCCCTNNTCT
GGCAAAAAACCTCCAAACCTCGAGTTAATGGATCGATGGCGAATCTTCCG
ATTCTCCACTCTGAAGAAAAGATAGTTGAAACGGCGGAGCAGAATCCAGT
GGCGGTGGTTATCGGCGAGACGGGGTCCGGCAAGATCTCGTTGTTCTCTC
AGATACTCCACCGACGGGGCGTCACCAGGTCCGGAAGTATCGGCGTTGCT
CAGCCTCGCCGAGTCGCTGCCGCCCCCGTTGCCAGACGAGTTGCACAGGA
ACTTGGTGTTCGGCTTGGGGAGGAAGTGGGCTATGCAATACGATTCGAGG
ATAGAACATCGGAGAGAACACTTATTAAACACCTTACTGATGGAGCTCTT
CTCCGAGAAATCCTGTCTAATCCAGAGCTTAGTCCGTGTTCGGTTCTCAT
ATCAGATGAAGCCCATGAGAGGAGTCTCAACACGGACATATTGCTGGGTC
TTGTGAAACGCTCGGCTAATCTGCGAGCCTCCAACTCAAAGAGTCTGACC
ACGTCAGCAACTCTTGATGGTGAAAAAGCCTCCAAGCTCTTGTTCCATCG
CCCCACGTTGAATGCCCCTGGAAAGCTCGATCCTGTGGAGATTTTGCACA
GCACGGCAGCGTCCTCCAAGCTGCCTTGCGTCTGCTTTGCAACCCGCGCT
CGATATACATGCGCCGCGACCAGCAGGTGACCGTGTCGCTCCCTCTGCCC
GCGCAGGGCGTTCACCAGAAGCCGCGCCCGCGGCTCCACCATCAAACCCC
ACCCGGCNCGCTGGGCCCTGCCTGGATGCCGCCTTCCTCCCCCTCAGGGG
CGCCCGCCCGCCGCGTGCGCGTCCGGTGGTTCTGGTCCCCACCTCCTACG
GGGGCGGATAATGGACACAAAACAACAAAGAAACA
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