EY753733

Overview
NameEY753733
Unique NameEY753733
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length855
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_ARATH (Nuclear cap-binding protein subunit 1 OS=Arabidopsis thaliana GN=ABH1 PE=1 SV=2)

HSP 1 Score: 251.521 bits (641), Expect = 2.304e-69
Identity = 117/162 (72.22%), Postives = 139/162 (85.80%), Query Frame = 3
Query:  210 MSSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            MS+WK LLL+IG+  PEYG S D KDHIETCFGVIRRE+E S D V  +++ CAEQ+PHKIPLYGTL+GLLNLENEDFV+K+VE+    FQ ALDSGNC+ IRIL+RF+T ++CSK++QP SL+VVFETLLSSAATTVDE+KGNPSWQ +ADFYV CILS L
Sbjct:    1 MSNWKTLLLRIGEKGPEYGTSSDYKDHIETCFGVIRREIERSGDQVLPFLLQCAEQLPHKIPLYGTLIGLLNLENEDFVQKLVESVHANFQVALDSGNCNSIRILLRFMTSLLCSKVIQPASLIVVFETLLSSAATTVDEEKGNPSWQPQADFYVICILSSL 162          

HSP 2 Score: 33.113 bits (74), Expect = 2.304e-69
Identity = 14/25 (56.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  695 PWGGAELIEQVPEK*E-IMAGLGAY 766
            PWGG+EL EQVP++ E ++ G+ AY
Sbjct:  163 PWGGSELAEQVPDEIERVLVGIQAY 187          
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_ORYSJ (Nuclear cap-binding protein subunit 1 OS=Oryza sativa subsp. japonica GN=ABH1 PE=2 SV=1)

HSP 1 Score: 215.698 bits (548), Expect = 2.049e-58
Identity = 98/161 (60.87%), Postives = 125/161 (77.64%), Query Frame = 3
Query:  213 SSWKNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            + W+ LLL+IGD CPEYG S D K+HIETC+GV+ RE EHS D +  +++ CA+Q+PHKIP +G L+GL+NLENEDF K +V+TT    QDAL + N DRIRIL+RFL  +MCSK++ P S++  FE LLSSAAT +DE+ GNPSWQ RADFYV CIL+ L
Sbjct:    3 AGWRTLLLRIGDRCPEYGGSADHKEHIETCYGVLCREYEHSKDAMFEFLLQCADQLPHKIPFFGVLIGLINLENEDFSKGIVDTTHANLQDALHNENRDRIRILLRFLCGLMCSKVVLPNSIIETFEALLSSAATILDEETGNPSWQPRADFYVYCILASL 163          

HSP 2 Score: 32.3426 bits (72), Expect = 2.049e-58
Identity = 13/25 (52.00%), Postives = 20/25 (80.00%), Query Frame = 2
Query:  695 PWGGAELIEQVPEK*E-IMAGLGAY 766
            PWGG+EL EQVP++ E ++ G+ +Y
Sbjct:  164 PWGGSELFEQVPDEFERVLVGIQSY 188          
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_RAT (Nuclear cap-binding protein subunit 1 OS=Rattus norvegicus GN=Ncbp1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 46/158 (29.11%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  222 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            ++L+ K+G+      ++  L+ ++E   GV+  +L +    +   +   A  +P K+ +Y TLVGLLN  N +F  + VE   R+ +++L + N +    L+RFL+ ++   ++   S+V +FE  +S    T +ED      Q R D+YV   LS L
Sbjct:   32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSL 177          
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_MOUSE (Nuclear cap-binding protein subunit 1 OS=Mus musculus GN=Ncbp1 PE=1 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 46/158 (29.11%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  222 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            ++L+ K+G+      ++  L+ ++E   GV+  +L +    +   +   A  +P K+ +Y TLVGLLN  N +F  + VE   R+ +++L + N +    L+RFL+ ++   ++   S+V +FE  +S    T +ED      Q R D+YV   LS L
Sbjct:   32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSL 177          
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_HUMAN (Nuclear cap-binding protein subunit 1 OS=Homo sapiens GN=NCBP1 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.379e-11
Identity = 46/158 (29.11%), Postives = 83/158 (52.53%), Query Frame = 3
Query:  222 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            ++L+ K+G+      ++  L+ ++E   GV+  +L +    +   +   A  +P K+ +Y TLVGLLN  N +F  + VE   R+ +++L + N +    L+RFL+ ++   ++   S+V +FE  +S    T +ED      Q R D+YV   LS L
Sbjct:   32 ESLICKVGEK-----SACSLESNLEGLAGVLEADLPNYKSKILRLLCTVARLLPEKLTIYTTLVGLLNARNYNFGGEFVEAMIRQLKESLKANNYNEAVYLVRFLSDLVNCHVIAAPSMVAMFENFVS---VTQEEDVP----QVRRDWYVYAFLSSL 177          
BLAST of EY753733 vs. ExPASy Swiss-Prot
Match: NCBP1_ANOGA (Nuclear cap-binding protein subunit 1 OS=Anopheles gambiae GN=Cbp80 PE=3 SV=4)

HSP 1 Score: 69.3218 bits (168), Expect = 3.073e-11
Identity = 42/158 (26.58%), Postives = 84/158 (53.16%), Query Frame = 3
Query:  222 KNLLLKIGDNCPEYGNSDDLKDHIETCFGVIRRELEHSSDDVPHYIINCAEQIPHKIPLYGTLVGLLNLENEDFVKKVVETTQRKFQDALDSGNCDRIRILMRFLTVMMCSKILQPGSLVVVFETLLSSAATTVDEDKGNPSWQARADFYVTCILSCL 695
            + L+L++G+N     ++  L+ ++E    V+  +L +    +   + +C  ++P K  +Y T+VGL+N +N +F  + VE   + F+D+L     D  R  +RFL  ++   ++   SL+ + ++++ +A    +ED      Q R D+YV  +LS L
Sbjct:   35 ETLILRVGEN-----STSSLESNLEGLVSVLESDLGNFRSKILRILSDCPIKMPEKCTIYSTMVGLMNAKNYNFGGEFVEYMVKTFKDSLKQCQWDAARYALRFLADLVNCHVISTNSLLQLLDSMVDAA----NEDNVP---QVRRDWYVFAVLSTL 180          
The following BLAST results are available for this feature:
BLAST of EY753733 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 6
Match NameE-valueIdentityDescription
NCBP1_ARATH2.304e-6972.22Nuclear cap-binding protein subunit 1 OS=Arabidops... [more]
NCBP1_ORYSJ2.049e-5860.87Nuclear cap-binding protein subunit 1 OS=Oryza sat... [more]
NCBP1_RAT1.379e-1129.11Nuclear cap-binding protein subunit 1 OS=Rattus no... [more]
NCBP1_MOUSE1.379e-1129.11Nuclear cap-binding protein subunit 1 OS=Mus muscu... [more]
NCBP1_HUMAN1.379e-1129.11Nuclear cap-binding protein subunit 1 OS=Homo sapi... [more]
NCBP1_ANOGA3.073e-1126.58Nuclear cap-binding protein subunit 1 OS=Anopheles... [more]
back to top
Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-C05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753733 ID=EY753733; Name=EY753733; organism=Citrus sinensis; type=EST; length=855bp
TATGCTTCTTTGGTTTATTTTGTTTACCTAAAAACTATTTTATAAATATT
CTGGGTAAGTTCCAACCGGGCTGGACCGGCTCCGTTAGGGTTCAAGTTAA
TTGGAATCCAATTTGCCACAAAACCCTGCAAATCCCCTTCTTCTTACTAA
ACTGCTGGCTCTTCCTCTTCCTCTGCTTCTGCTTCTCTCACGGAACAAGA
GATTAAGAAATGAGCAGCTGGAAGAACCTTCTGCTTAAAATCGGCGACAA
TTGTCCGGAGTACGGCAACTCCGACGACTTGAAGGATCACATTGAAACAT
GCTTCGGCGTAATTCGGCGAGAACTCGAGCACTCTTCTGACGATGTTCCA
CATTATATTATTAATTGTGCTGAACAAATTCCACACAAGATTCCTTTATA
TGGGACATTGGTTGGCTTGCTGAACTTGGAAAATGAGGACTTTGTTAAAA
AAGTTGTGGAGACCACTCAAAGAAAATTCCAGGATGCCTTAGACTCTGGA
AACTGCGACCGCATTCGTATTTTGATGCGATTTTTGACTGTTATGATGTG
TAGCAAAATTCTCCAGCCTGGTTCTCTGGTGGTGGTCTTTGAAACTTTAT
TGTCATCAGCTGCCACAACAGTGGATGAGGACAAAGGAAATCCTTCCTGG
CAAGCACGTGCTGACTTTTATGTAACTTGCATTTTGTCTTGTCTCCATGG
GGAGGAGCAGAACTCATTGAGCAAGTTCCTGAGAAATGAGAGATCATGGC
TGGTTTGGGAGCCTACTTGAGCATAGAAAGCATACTTCTGACACTGTCTG
NTTTCTTTGAGGAAATGATGATCTGGGAAGGTCTTGTGAAAAGATTTCTG
GGAGA
back to top