EY753725

Overview
NameEY753725
Unique NameEY753725
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length471
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:506..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 8.396e-21
Identity = 44/47 (93.62%), Postives = 47/47 (100.00%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 142
            AF+MTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:  128 AFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 1.432e-20
Identity = 43/48 (89.58%), Postives = 48/48 (100.00%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            AF+MTFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:  127 AFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 7.355e-17
Identity = 36/46 (78.26%), Postives = 42/46 (91.30%), Query Frame = 2
Query:    5 FVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 142
            F+MTFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:  150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 77.7962 bits (190), Expect = 2.616e-14
Identity = 33/48 (68.75%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            + +++ FS+FD+PVFWPILL Y+I+LF LTMRRQI HMIKYRYIP +I
Sbjct:  131 SLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 32/48 (66.67%), Postives = 42/48 (87.50%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 145
            + V++ FS+FD+PVFWPILL Y+++LF LTMRRQI HM+KYRYIP +I
Sbjct:  131 SLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDI 178          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_BOVIN (Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2)

HSP 1 Score: 75.8702 bits (185), Expect = 9.941e-14
Identity = 33/46 (71.74%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A V TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMVCTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753725 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 75.485 bits (184), Expect = 1.298e-13
Identity = 32/46 (69.57%), Postives = 39/46 (84.78%), Query Frame = 2
Query:    2 AFVMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 139
            A + TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  132 AMICTFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
The following BLAST results are available for this feature:
BLAST of EY753725 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH8.396e-2193.62Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH1.432e-2089.58Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH7.355e-1778.26Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_YEAST2.616e-1468.75Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SACPS3.417e-1466.67Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_PONAB9.941e-1471.74Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_HUMAN9.941e-1471.74Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_BOVIN9.941e-1471.74Protein RER1 OS=Bos taurus GN=RER1 PE=2 SV=2[more]
RER1_RAT1.298e-1369.57Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_MOUSE1.298e-1369.57Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-B08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753725 ID=EY753725; Name=EY753725; organism=Citrus sinensis; type=EST; length=471bp
AGCTTTTGTAATGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGC
CTATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGC
CAAATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAA
ACAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTG
GGGACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATG
GGGATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTT
TCAAGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAA
AGTTCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATG
TTTACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTNNAAAAAA
AAAAAAAAAAAAAAAAAAAAA
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