EY753719

Overview
NameEY753719
Unique NameEY753719
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length876
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753719_ssr150 microsatellite EY753719_ssr150:150..161. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753719 vs. ExPASy Swiss-Prot
Match: NUDC_MOUSE (Nuclear migration protein nudC OS=Mus musculus GN=Nudc PE=1 SV=1)

HSP 1 Score: 55.8398 bits (133), Expect = 1.374e-13
Identity = 24/47 (51.06%), Postives = 36/47 (76.60%), Query Frame = 1
Query:  601 KSRVVLCEIKKDHLKVGLKGQPPIIDGELHMAVKPDDWYWSIEDQKL 741
            K + V+ +I++ HL+VGLKGQPP++DGEL+  VK ++  W IED K+
Sbjct:  195 KGKDVVVDIQRRHLRVGLKGQPPVVDGELYNEVKVEESSWLIEDGKV 241          

HSP 2 Score: 41.5874 bits (96), Expect = 1.374e-13
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  452 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP 586
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP
Sbjct:  143 QDAEDEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLAELDLAVP 187          
BLAST of EY753719 vs. ExPASy Swiss-Prot
Match: NUDC_RAT (Nuclear migration protein nudC OS=Rattus norvegicus GN=Nudc PE=1 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 6.597e-13
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  601 KSRVVLCEIKKDHLKVGLKGQPPIIDGELHMAVKPDDWYWSIEDQKL 741
            K + V+ +I++ HL+VGLKGQ P+IDGEL+  VK ++  W IED K+
Sbjct:  195 KGKDVVVDIQRRHLRVGLKGQAPVIDGELYNEVKVEESSWLIEDGKV 241          

HSP 2 Score: 41.9726 bits (97), Expect = 6.597e-13
Identity = 20/45 (44.44%), Postives = 24/45 (53.33%), Query Frame = 2
Query:  452 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP 586
            Q A   E + D        PN GNG DL NY WTQ L E+ ++VP
Sbjct:  143 QDAEEEEDEEDEKDKGKLKPNLGNGADLPNYRWTQTLSELDLAVP 187          
BLAST of EY753719 vs. ExPASy Swiss-Prot
Match: NUDC_BOVIN (Nuclear migration protein nudC OS=Bos taurus GN=NUDC PE=2 SV=1)

HSP 1 Score: 53.1434 bits (126), Expect = 1.877e-12
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  601 KSRVVLCEIKKDHLKVGLKGQPPIIDGELHMAVKPDDWYWSIEDQKL 741
            K + V+ +I++ HL+VGLKGQP I+DGEL+  VK ++  W IED K+
Sbjct:  195 KGKDVVVDIQRRHLRVGLKGQPAIVDGELYNEVKVEESSWLIEDGKV 241          

HSP 2 Score: 40.4318 bits (93), Expect = 1.877e-12
Identity = 19/45 (42.22%), Postives = 25/45 (55.56%), Query Frame = 2
Query:  452 QKAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP 586
            Q+A   E + D        PN GNG DL +Y WTQ L E+ ++VP
Sbjct:  143 QEAEEEEEEDDEKDKGKLKPNLGNGADLPSYRWTQTLSELDLAVP 187          
BLAST of EY753719 vs. ExPASy Swiss-Prot
Match: NUDC_HUMAN (Nuclear migration protein nudC OS=Homo sapiens GN=NUDC PE=1 SV=1)

HSP 1 Score: 52.373 bits (124), Expect = 5.338e-12
Identity = 24/47 (51.06%), Postives = 35/47 (74.47%), Query Frame = 1
Query:  601 KSRVVLCEIKKDHLKVGLKGQPPIIDGELHMAVKPDDWYWSIEDQKL 741
            K + ++ +I++ HL+VGLKGQP IIDGEL+  VK ++  W IED K+
Sbjct:  194 KGKDMVVDIQRRHLRVGLKGQPAIIDGELYNEVKVEESSWLIEDGKV 240          

HSP 2 Score: 39.6614 bits (91), Expect = 5.338e-12
Identity = 16/26 (61.54%), Postives = 19/26 (73.08%), Query Frame = 2
Query:  509 PNKGNGLDLENYSWTQILQEVTVSVP 586
            PN GNG DL NY WTQ L E+ ++VP
Sbjct:  161 PNLGNGADLPNYRWTQTLSELDLAVP 186          
BLAST of EY753719 vs. ExPASy Swiss-Prot
Match: NUDC_CHICK (Nuclear migration protein nudC OS=Gallus gallus GN=NUDC PE=2 SV=1)

HSP 1 Score: 49.6766 bits (117), Expect = 6.922e-12
Identity = 23/46 (50.00%), Postives = 32/46 (69.57%), Query Frame = 1
Query:  601 KSRVVLCEIKKDHLKVGLKGQPPIIDGELHMAVKPDDWYWSIEDQK 738
            K + V+ +I++  L+VGLKG PP+IDGEL   VK ++  W IED K
Sbjct:  204 KGKDVVVDIQRRRLRVGLKGHPPVIDGELFNEVKVEESSWLIEDGK 249          

HSP 2 Score: 41.9726 bits (97), Expect = 6.922e-12
Identity = 18/44 (40.91%), Postives = 24/44 (54.55%), Query Frame = 2
Query:  455 KAPPPEPQLDANGNPARAPNKGNGLDLENYSWTQILQEVTVSVP 586
            K    + + D N      PN GNG DL NY WTQ L E+ +++P
Sbjct:  153 KQETDDEEKDENDKGKLKPNAGNGADLPNYRWTQTLSELDLAIP 196          
The following BLAST results are available for this feature:
BLAST of EY753719 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
NUDC_MOUSE1.374e-1351.06Nuclear migration protein nudC OS=Mus musculus GN=... [more]
NUDC_RAT6.597e-1351.06Nuclear migration protein nudC OS=Rattus norvegicu... [more]
NUDC_BOVIN1.877e-1251.06Nuclear migration protein nudC OS=Bos taurus GN=NU... [more]
NUDC_HUMAN5.338e-1251.06Nuclear migration protein nudC OS=Homo sapiens GN=... [more]
NUDC_CHICK6.922e-1250.00Nuclear migration protein nudC OS=Gallus gallus GN... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-B02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753719 ID=EY753719; Name=EY753719; organism=Citrus sinensis; type=EST; length=876bp
AAAAAAAACATTTAAGNACTCTGCTTCAAATCAAGTCACTCGCTCGAAAA
GCTCCCTCACCAAACTAAAGAAAGCAGCGATGGCGATAATCTCCGATTTC
CAAGAAGACGAGAACAAGCCTGACCCCAAGAAGAACCCATCGGCTTCCGC
TTCTTCTTCTTCGCCATCATCGGCTAAGACGTCGTCGTTTAGCGCGACAT
TGGATCCGTCGAATCCGCTAGGGTTTCTGGAGAAGGCGTTCGAGTTTGTG
GCTAAAGAGAGCGATTTCCTGACGAAGGACGCTGCCGAGAAGCAGATCGT
GGCGGCCATGCGAGCGGCCAAGGAGAAGAGTAGTAATACTAAGAAGCAGC
CGCAGCCCCAGTCGCCGCACCAGGAGGAGGTTAAGGCTAAGAAAATGAAG
GAAGAGAAGAAGGAGGAGGAGAAATTCGAGGATTTGCCGACGATGAAGGT
GCAGAAAGCTCCGCCGCCGGAGCCTCAATTGGATGCCAATGGCAATCCTG
CTAGAGCTCCAAATAAAGGCAATGGTCTTGATTTGGAGAATTACTCCTGG
ACACAAATCCTGCAAGAGGTGACTGTCAGTGTTCCGGTTCCTGCTGGTAC
AAATCAAGGGTTGTTTTATGTGAGATAAAGAAAGACCATCTTAAAGTTGG
ACTCAAGGGGCAGCCTCCCATAATTGATGGGGAGCTTCATATGGCCGTTA
AGCCTGATGATTGGTATTGGAGCATAGAGGACCAGAAACTGTTTCTATTT
TTTGACCAGCAAATCAGATGGAGGGTGGAAATGTCTGATAAAGGAGCCCT
GAATTGACCTCAAAAAGTGAACTGGAACAGTAATATCTGACCTGATCAAA
ACTGGTCACTGTGAAAAGAGATGTTG
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