EY753716

Overview
NameEY753716
Unique NameEY753716
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length893
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753716_ssr380 microsatellite EY753716_ssr380:380..391. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A_MANES (Eukaryotic translation initiation factor 5A OS=Manihot esculenta PE=2 SV=2)

HSP 1 Score: 173.326 bits (438), Expect = 2.803e-57
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIK RPCKV+EVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKNRPCKVMEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 70.8626 bits (172), Expect = 2.803e-57
Identity = 42/80 (52.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTE G+TKDDLRLPTDENLLS++ D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTETGNTKDDLRLPTDENLLSQIKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A2_SOLLC (Eukaryotic translation initiation factor 5A-2 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 3.655e-57
Identity = 82/83 (98.80%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 69.3218 bits (168), Expect = 3.655e-57
Identity = 41/80 (51.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTE+G+TKDDLRLPTDENLL ++ D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTESGNTKDDLRLPTDENLLKQVKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLTU (Eukaryotic translation initiation factor 5A-3 OS=Solanum tuberosum GN=EIF5A3 PE=2 SV=1)

HSP 1 Score: 173.326 bits (438), Expect = 3.051e-56
Identity = 81/83 (97.59%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 67.3958 bits (163), Expect = 3.051e-56
Identity = 40/80 (50.00%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTE+G+TKDDLRLPTDE+LL ++ D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTESGNTKDDLRLPTDESLLKQVKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A3_SOLLC (Eukaryotic translation initiation factor 5A-3 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 167.933 bits (424), Expect = 1.149e-55
Identity = 79/83 (95.18%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEH FESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 70.8626 bits (172), Expect = 1.149e-55
Identity = 42/80 (52.50%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLT+NG+TKDDLRLPTDENLLS + D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTDNGNTKDDLRLPTDENLLSLIKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLLC (Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum PE=2 SV=1)

HSP 1 Score: 171.014 bits (432), Expect = 4.327e-55
Identity = 80/83 (96.39%), Postives = 81/83 (97.59%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKT+PQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFN KKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNAKKLEDIVPSSHNCDV 83          

HSP 2 Score: 65.855 bits (159), Expect = 4.327e-55
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRL 660
            VPHV RTDYQLIDISEDGFV                               SLLTENG+TKDDLRLPTD+ LL+++
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTENGNTKDDLRLPTDDTLLNQV 127          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A2_NICPL (Eukaryotic translation initiation factor 5A-2 OS=Nicotiana plumbaginifolia GN=EIF-5A2 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 4.327e-55
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEH FESKADAGASKT+PQQAGTIRKNG+IVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKNGHIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 70.8626 bits (172), Expect = 4.327e-55
Identity = 41/80 (51.25%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTENG+TKDDLRLPTD+NLL+++ D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTENGNTKDDLRLPTDDNLLTQIKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A1_SOLTU (Eukaryotic translation initiation factor 5A-1/2 OS=Solanum tuberosum GN=EIF5A1 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 5.641e-55
Identity = 80/83 (96.39%), Postives = 82/83 (98.80%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIFNGKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFNGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 65.0846 bits (157), Expect = 5.641e-55
Identity = 38/76 (50.00%), Postives = 43/76 (56.58%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRL 660
            VPHV RTDYQLIDISEDGFV                               SLLTENG+TKDDLRLPTD+ LL+++
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTENGNTKDDLRLPTDDALLNQV 127          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A1_TOBAC (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana tabacum GN=EIF-5A1 PE=3 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.641e-55
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 69.707 bits (169), Expect = 5.641e-55
Identity = 41/80 (51.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTENG+TKDDLRLPTD+NLL+ + D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTENGNTKDDLRLPTDDNLLALIKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A1_NICPL (Eukaryotic translation initiation factor 5A-1 OS=Nicotiana plumbaginifolia GN=EIF-5A1 PE=2 SV=1)

HSP 1 Score: 166.777 bits (421), Expect = 5.641e-55
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEHHFESKADAGASKT+PQQAGTIRKNG+IVIK RPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHHFESKADAGASKTYPQQAGTIRKNGHIVIKNRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 69.707 bits (169), Expect = 5.641e-55
Identity = 41/80 (51.25%), Postives = 45/80 (56.25%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLTENG+TKDDLRLPTD+NLL+ + D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTENGNTKDDLRLPTDDNLLALIKDGF 131          
BLAST of EY753716 vs. ExPASy Swiss-Prot
Match: IF5A4_SOLTU (Eukaryotic translation initiation factor 5A-4 OS=Solanum tuberosum GN=EIF5A4 PE=2 SV=1)

HSP 1 Score: 166.007 bits (419), Expect = 1.629e-54
Identity = 78/83 (93.98%), Postives = 80/83 (96.39%), Query Frame = 2
Query:   80 MSDEEHHFESKADAGASKTFPQQAGTIRKNGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVGIDIFNGKKLEDIVPSSHNCDV 328
            MSDEEH FESKADAGASKT+PQQAGTIRK+GYIVIKGRPCKVVEVSTSKTGKHGHAKCHFV IDIF GKKLEDIVPSSHNCDV
Sbjct:    1 MSDEEHQFESKADAGASKTYPQQAGTIRKSGYIVIKGRPCKVVEVSTSKTGKHGHAKCHFVAIDIFTGKKLEDIVPSSHNCDV 83          

HSP 2 Score: 68.9366 bits (167), Expect = 1.629e-54
Identity = 40/80 (50.00%), Postives = 46/80 (57.50%), Query Frame = 1
Query:  433 VPHVTRTDYQLIDISEDGFVCXXXXXXXXXXXXXXXXMRLVNFCYSNKLQVSLLTENGHTKDDLRLPTDENLLSRLVD*F 672
            VPHV RTDYQLIDISEDGFV                               SLLT+NG+TKDDLRLPTD++LLS++ D F
Sbjct:   83 VPHVNRTDYQLIDISEDGFV-------------------------------SLLTDNGNTKDDLRLPTDDSLLSQIKDGF 131          
The following BLAST results are available for this feature:
BLAST of EY753716 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 45
Match NameE-valueIdentityDescription
IF5A_MANES2.803e-5797.59Eukaryotic translation initiation factor 5A OS=Man... [more]
IF5A2_SOLLC3.655e-5798.80Eukaryotic translation initiation factor 5A-2 OS=S... [more]
IF5A3_SOLTU3.051e-5697.59Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A3_SOLLC1.149e-5595.18Eukaryotic translation initiation factor 5A-3 OS=S... [more]
IF5A4_SOLLC4.327e-5596.39Eukaryotic translation initiation factor 5A-4 OS=S... [more]
IF5A2_NICPL4.327e-5593.98Eukaryotic translation initiation factor 5A-2 OS=N... [more]
IF5A1_SOLTU5.641e-5596.39Eukaryotic translation initiation factor 5A-1/2 OS... [more]
IF5A1_TOBAC5.641e-5593.98Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A1_NICPL5.641e-5593.98Eukaryotic translation initiation factor 5A-1 OS=N... [more]
IF5A4_SOLTU1.629e-5493.98Eukaryotic translation initiation factor 5A-4 OS=S... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-A11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753716 ID=EY753716; Name=EY753716; organism=Citrus sinensis; type=EST; length=893bp
CCACGCGTCCGGGTATAGTTCGATTCTACCAAAATTTGGTTGTCGAAGCT
CTAATTGTGAATCGCAGGAACCAGACGATATGTCGGACGAAGAGCACCAC
TTTGAGTCGAAGGCCGACGCCGGCGCCTCCAAGACATTTCCTCAGCAGGC
CGGAACCATCCGCAAAAACGGTTATATCGTCATCAAAGGTCGTCCTTGCA
AGGTTGTTGAGGTTTCAACTTCCAAGACTGGAAAGCACGGTCATGCTAAG
TGTCACTTTGTAGGAATTGACATCTTCAATGGCAAGAAGCTTGAGGATAT
TGTTCCCTCTTCCCACAACTGTGATGTATTGATTTATGCTTCTTTGAGTG
CATTTAACTTTATAATTTTTTACTTCTTTTAAATAAATAAAAAAATTCGC
GTGAGGTTAATGTGTTTTATTTCACTTTATAGGTTCCTCATGTCACTCGC
ACTGACTACCAGCTGATTGATATCTCTGAGGATGGATTTGTATGTTCTTA
CTTTGTTTTGTCATGTTCATTTTACTTGTCTTTTTTGCTGTAAATGCGAT
TAGTTAATTTCTGTTACTCTAATAAATTGCAGGTTAGCCTGCTGACTGAG
AATGGGCATACCAAGGATGACCTGAGACTTCCAACTGATGAAAATCTGCT
TTCCAGGTTAGTTGACTGATTTCCATTTTTACAAGGGACCCCATGTTGCA
GTGTGTTATAATTTTANTGTCGTTATGGTTTGGAGGTATGAAAAAAAAAT
GGGATGCTGGGTTCTATTACTGNNCCATCTGTCAAATTAAAGGTGAATCT
TGTTTGATCATAATGGCAACTAACAAAATTTTCATGGTTGAATTTGAAGT
TTAAAACCTGGGATCGNCGGTTTTGATTTTGCCATTGAACTTT
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