EY753708

Overview
NameEY753708
Unique NameEY753708
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length925
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753708_ssr329 microsatellite EY753708_ssr329:329..346. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML44_ARATH (Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=1 SV=2)

HSP 1 Score: 130.954 bits (328), Expect = 9.735e-30
Identity = 75/172 (43.60%), Postives = 104/172 (60.47%), Query Frame = 2
Query:  107 MDCTHNMAPLTANDLQRIFKKLDRNDDGLVSLEELNWVLERIG-VHFTLEELEALVEKPSLCFDEFL-FFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 616
            MDC+     +T NDL+R+FK LD+N DGLV+L+EL W+L+++G    T +ELE +V K SL  DEFL F+ D+++                                 + +AF+VFDVNGDG+I++EEL+ VL RLG  +E  + DC  MI V+D N DG +DFEEFKNM+L
Sbjct:    1 MDCSF----ITTNDLRRMFKTLDKNQDGLVTLDELLWILDKLGWAEHTPDELELIVGKQSLDLDEFLRFYYDAVLDSKGSKKNIDVVADNDEA---------------IARAFNVFDVNGDGYISAEELRDVLERLGFEEEAKAWDCGRMIRVHDKNLDGFVDFEEFKNMIL 153          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML3_ARATH (Calmodulin-like protein 3 OS=Arabidopsis thaliana GN=CML3 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 4.242e-17
Identity = 54/156 (34.62%), Postives = 81/156 (51.92%), Query Frame = 2
Query:  146 DLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 613
            +L RIF+  DRN DG ++ +ELN  LE +G++   ++L  ++EK  L  D ++                                        + +AF+VFD N DGFIT EEL+SVLA LGL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELARIFQMFDRNGDGKITKQELNDSLENLGIYIPDKDLVQMIEKIDLNGDGYV-------------------DIEEFGGLYQTIMEERDEEEDMREAFNVFDQNRDGFITVEELRSVLASLGLKQGRTLEDCKRMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML28_ORYSJ (Probable calcium-binding protein CML28 OS=Oryza sativa subsp. japonica GN=CML28 PE=2 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 1.234e-16
Identity = 55/166 (33.13%), Postives = 85/166 (51.20%), Query Frame = 2
Query:  134 LTANDLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEKPSL----CFD--EFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 613
            + + +L+++FK  D+N DG ++ +EL    +  G+    +EL+A ++K       C D  EF     SI+                                 + +AF+VFD NGDGFIT +EL+SVL+ LGL   +++ DCR MI + D + DG +DF+EFK MM
Sbjct:    1 MDSTELRKVFKMFDKNGDGRITKKELGESFKNFGIFIPDDELDATMDKIDANGDGCVDVEEFGLLYRSILGDDAAGRAPRTAAAAIGGEGGAPDDEDEG----MREAFNVFDQNGDGFITVDELRSVLSSLGLKHGRTADDCRRMISMVDADGDGRVDFKEFKQMM 162          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML2_ARATH (Calmodulin-like protein 2 OS=Arabidopsis thaliana GN=CML2 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 8.846e-15
Identity = 49/162 (30.25%), Postives = 78/162 (48.15%), Query Frame = 2
Query:  146 DLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEKP------SLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 613
            +L R+F+  D+N DG ++  EL    + +G+     E+  ++ K       ++  DEF      ++                                 + +AF VFD NGDGFIT EEL+SVLA +GL   ++ +DC+ MI   D + DG+++F+EFK MM
Sbjct:    5 ELSRVFQMFDKNGDGKIAKNELKDFFKSVGIMVPENEINEMIAKMDVNGDGAMDIDEFGSLYQEMVEEKEEEED-------------------------MREAFRVFDQNGDGFITDEELRSVLASMGLKQGRTLEDCKKMISKVDVDGDGMVNFKEFKQMM 141          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML25_ARATH (Probable calcium-binding protein CML25 OS=Arabidopsis thaliana GN=CML25 PE=2 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 2.179e-13
Identity = 52/156 (33.33%), Postives = 75/156 (48.08%), Query Frame = 2
Query:  146 DLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMM 613
            +L+ +FKK D N DG +S +EL  ++  +G     EELE  + +     D ++ F + +                                  L  AFSV+D++G+G I++EEL  VL  LG  DE S  +CR MI   D + DG +DFEEFK MM
Sbjct:   37 ELEAVFKKFDVNGDGKISSKELGAIMTSLGHEVPEEELEKAITEIDRKGDGYINFEEFV-------------------ELNTKGMDQNDVLENLKDAFSVYDIDGNGSISAEELHEVLRSLG--DECSIAECRKMIGGVDKDGDGTIDFEEFKIMM 171          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML32_ORYSJ (Probable calcium-binding protein CML32 OS=Oryza sativa subsp. japonica GN=CML32 PE=2 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 3.717e-13
Identity = 58/171 (33.92%), Postives = 81/171 (47.37%), Query Frame = 2
Query:  134 LTANDLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEK------PSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMMLRSTV 628
            L A  L+R+F   DRN DG ++++EL   L+ +G+    + L A V          L F++F    D++                                  + +AF VFDV+GDGFI++ ELQ VL +LGL +  S    R MI   D NSDG +DF EFK+MM   TV
Sbjct:   30 LNAVRLRRVFDLFDRNGDGEITVDELAQALDALGLVADRDGLAATVSAYVPEGAAGLRFEDF----DAL---HRALGDALFGSLDGAAAAGEPGGGGGDEEEEMREAFKVFDVDGDGFISASELQEVLKKLGLPEAGSLATVREMICNVDRNSDGRVDFGEFKSMMQGITV 193          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML23_ARATH (Probable calcium-binding protein CML23 OS=Arabidopsis thaliana GN=CML23 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 4.109e-12
Identity = 44/157 (28.03%), Postives = 84/157 (53.50%), Query Frame = 2
Query:  146 DLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVEKPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 616
            D++++F++ D+N+DG +S++EL  V+  +  + + EE +A++++  L  + F+   + +                                  L +AF ++D++ +G I++ EL SV+  LG  ++ S QDC+ MI   D++ DG +DFEEFK MM+
Sbjct:   15 DIKKVFQRFDKNNDGKISIDELKDVIGALSPNASQEETKAMMKEFDLDGNGFIDLDEFVA-----------------LFQISDQSSNNSAIRDLKEAFDLYDLDRNGRISANELHSVMKNLG--EKCSIQDCQRMINKVDSDGDGCVDFEEFKKMMM 152          
BLAST of EY753708 vs. ExPASy Swiss-Prot
Match: CML6_ORYSJ (Putative calmodulin-like protein 6 OS=Oryza sativa subsp. japonica GN=CML6 PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 4.543e-11
Identity = 48/164 (29.27%), Postives = 78/164 (47.56%), Query Frame = 2
Query:  143 NDLQRIFKKLDRNDDGLVSLEELNWVLERIGVHFTLEELEALVE------KPSLCFDEFLFFCDSIISXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLYKAFSVFDVNGDGFITSEELQSVLARLGLWDEKSSQDCRSMIYVYDTNSDGVLDFEEFKNMML 616
            +D +  F   D+N+DG +S EEL  VL R+G+  + E+L+ ++         ++ FDEFL      +                                 L KAF +FD + +GFI+  EL  V+A LG  +E +  +   M+   D+N+DG +D+EEFK +M+
Sbjct:   11 SDFRDAFSLFDKNNDGCISREELATVLTRLGMAPSQEDLQDMIVAVDEDGNGTIEFDEFLAIMKKKL----------------------YENDKGDDEEELRKAFRIFDKDDNGFISRNELSMVMASLG--EEMTEDEIDDMMKAADSNNDGQVDYEEFKRVMM 150          
The following BLAST results are available for this feature:
BLAST of EY753708 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 8
Match NameE-valueIdentityDescription
CML44_ARATH9.735e-3043.60Probable calcium-binding protein CML44 OS=Arabidop... [more]
CML3_ARATH4.242e-1734.62Calmodulin-like protein 3 OS=Arabidopsis thaliana ... [more]
CML28_ORYSJ1.234e-1633.13Probable calcium-binding protein CML28 OS=Oryza sa... [more]
CML2_ARATH8.846e-1530.25Calmodulin-like protein 2 OS=Arabidopsis thaliana ... [more]
CML25_ARATH2.179e-1333.33Probable calcium-binding protein CML25 OS=Arabidop... [more]
CML32_ORYSJ3.717e-1333.92Probable calcium-binding protein CML32 OS=Oryza sa... [more]
CML23_ARATH4.109e-1228.03Probable calcium-binding protein CML23 OS=Arabidop... [more]
CML6_ORYSJ4.543e-1129.27Putative calmodulin-like protein 6 OS=Oryza sativa... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-006-A02-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753708 ID=EY753708; Name=EY753708; organism=Citrus sinensis; type=EST; length=925bp
CGCCTGCCGGGACTTTGGCCGGGATTCCCGGGCCGACCACGCCGTCGGGC
TGTACTGATTATTAGGTACTTGGATTGTGATTCGCGAATGATCATTGTGA
TATTATATGGACTGCACTCACAATATGGCTCCTCTTACCGCCAATGACTT
GCAAAGAATTTTCAAGAAGCTTGATCGAAATGACGATGGCCTGGTGAGCT
TGGAGGAACTCAACTGGGTTCTTGAAAGAATTGGGGTACATTTTACCCTT
GAAGAGCTTGAAGCCCTAGTTGAAAAACCAAGCCTCTGCTTCGATGAATT
CTTGTTCTTCTGTGATTCCATCATATCGAATAATAATAATAATAATCCCA
ATGCTGCTGCTGATGCTTCCCAGAATGCTGATGAAGCAGCTGATGATGAC
AGCGGCGACGAAGAGATCAGTGATCTTTACAAAGCGTTCAGTGTGTTCGA
TGTGAATGGTGATGGATTCATTACAAGCGAAGAGCTTCAGAGTGTGTTGG
CGAGACTCGGATTGTGGGATGAGAAAAGCAGCCAAGATTGCAGAAGCATG
ATTTACGTGTATGATACCAATTCTGATGGGGTTCTTGATTTTGAAGAATT
CAAGAACATGATGCTTCGTAGTACTGTTTCTTAATTCGTTATTAATTTCG
TGCCTGTTAATCTTGACCTTGTTTTTTTTTTTTTTTTATAATCTGTGAAA
ATTATGTCAATTATATGATGGGCGGTAATTTGTTAAAAACACAGACACCC
CACCACACCCACACCGAGGAAGCGGCACCCCTGGGCGCAGTCTGGGAGGG
GGGGAAGGACATGCTAGACTTCGTATCAATAAAGAACACACCCCGACCGA
ACACCTACATACTTCTATATACATACCTAGATATGCGTCGCGTGTTTATC
ATAGAACGCAACCCCTCCCCACGCG
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