EY753625

Overview
NameEY753625
Unique NameEY753625
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length923
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753625 vs. ExPASy Swiss-Prot
Match: NOT2_SCHPO (General negative regulator of transcription subunit 2 OS=Schizosaccharomyces pombe GN=not2 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 5.512e-17
Identity = 58/164 (35.37%), Postives = 76/164 (46.34%), Query Frame = 1
Query:   85 SPWSDEPAK---GDPEFTVPQCYYAKQPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALPQH 567
            SPW++   K     P F +P CY    PP      F +F+ ETLFYIFY                                 +MP+D  Q  AA EL NR W +HKE R+W   VP ++PL +T  +ERG Y  FDP  ++ I+KD F++ Y  LE R     H
Sbjct:   47 SPWAELNTKKPVSQPMFKLPACYKNVNPPPAISKIF-QFSDETLFYIFY---------------------------------TMPRDVMQEAAAQELTNRNWRFHKELRVWLTPVPGMKPLQRTPQFERGYYMFFDPIHWKRIKKD-FLLMYAALEDRAQSAVH 175          
BLAST of EY753625 vs. ExPASy Swiss-Prot
Match: CNOT2_MOUSE (CCR4-NOT transcription complex subunit 2 OS=Mus musculus GN=Cnot2 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 57/180 (31.67%), Postives = 80/180 (44.44%), Query Frame = 1
Query:   40 GPELEFNRKSFKTFGSPWSDEPAKG-DPEFTVPQCYYAK-----QPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 561
            G  L      +  F SPW+  P +  D +F VP  Y        +  A+  G + +   + LFY++Y                                     D  QL AA EL+NR W YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:  386 GLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGG---------------------------------DVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528          
BLAST of EY753625 vs. ExPASy Swiss-Prot
Match: CNOT2_HUMAN (CCR4-NOT transcription complex subunit 2 OS=Homo sapiens GN=CNOT2 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 4.666e-16
Identity = 57/180 (31.67%), Postives = 80/180 (44.44%), Query Frame = 1
Query:   40 GPELEFNRKSFKTFGSPWSDEPAKG-DPEFTVPQCYYAK-----QPPALHQGYFSKFTVETLFYIFYRCFSLIYFCFVLDTSSKPFFFFCT*QSWFSLFCSMPKDEAQLYAANELYNRGWFYHKEHRLWFIRVPNVEPLVKTNAYERGSYHCFDPNTFETIRKDNFVVHYEMLEKRPALP 561
            G  L      +  F SPW+  P +  D +F VP  Y        +  A+  G + +   + LFY++Y                                     D  QL AA EL+NR W YHKE R+W  R P +EP +KTN YERG+Y+ FD   +  + K+ F + Y+ LE+RP LP
Sbjct:  386 GLNLNSPENLYPKFASPWASSPCRPQDIDFHVPSEYLTNIHIRDKLAAIKLGRYGE---DLLFYLYYMNGG---------------------------------DVLQLLAAVELFNRDWRYHKEERVWITRAPGMEPTMKTNTYERGTYYFFDCLNWRKVAKE-FHLEYDKLEERPHLP 528          
The following BLAST results are available for this feature:
BLAST of EY753625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 3
Match NameE-valueIdentityDescription
NOT2_SCHPO5.512e-1735.37General negative regulator of transcription subuni... [more]
CNOT2_MOUSE4.666e-1631.67CCR4-NOT transcription complex subunit 2 OS=Mus mu... [more]
CNOT2_HUMAN4.666e-1631.67CCR4-NOT transcription complex subunit 2 OS=Homo s... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-005-A05-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753625 ID=EY753625; Name=EY753625; organism=Citrus sinensis; type=EST; length=923bp
CATCTTGGTACGCATCCTCGTTCTCTTGCCGGNATTCCCGGGCCCGAACT
TGAATTCAACAGAAAATCTTTCAAAACTTTTGGTTCGCCGTGGTCTGATG
AACCAGCAAAGGGTGACCCAGAGTTCACTGTGCCGCAATGTTATTACGCT
AAACAACCACCTGCTCTACATCAAGGTTATTTTTCAAAGTTCACGGTGGA
GACATTATTTTATATATTCTACAGGTGCTTCTCTTTAATTTATTTTTGTT
TCGTTTTGGATACCTCTTCAAAACCTTTTTTTTTTTTTTGCACTTAGCAA
TCATGGTTCTCTCTCTTTTGCAGCATGCCTAAAGACGAAGCCCAATTATA
TGCTGCAAATGAACTTTACAATAGAGGTTGGTTTTATCACAAGGAACATC
GGTTGTGGTTCATCAGAGTCCCCAATGTCGAGCCATTAGTTAAAACAAAT
GCATACGAGAGAGGATCTTATCACTGTTTTGATCCTAACACATTTGAAAC
AATCCGCAAGGATAATTTCGTTGTCCATTATGAGATGTTGGAAAAGAGAC
CAGCTCTTCCTCAACATTAACAAGATATTTTTTGAATTTACATTGTAAAG
TTTCTGTTGTGGAGCTCATTCATTAAAACGTAAGTCAGCTTGCAGCATTA
ATGTTTATTTGAATTTAGTAAATTGTTGCGTCAATGTTGNTGCAGTAATT
GGCCGCCCATTTAGCTTCATAATTCTTTCCCACCCCCTCTTTCCCTTTTT
GTGTAATACTATGCAAAGCATTTTCTCAAAGTTATATGANCAGGTACTCA
TGTATCTANGAAATAGATTCGGTTAAAAAAAAAAAAANAAANAAAAAAAA
AAAAAAAAAAAAAGGCCGGCGCTTCTAAAGATCCAGCTTACGTACGCTGG
CTGCAAGGNATAGCTCTTTTTAG
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