EY753616

Overview
NameEY753616
Unique NameEY753616
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length909
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753616_ssr73 microsatellite EY753616_ssr73:73..84. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: GI1L3_ARATH (Probable gibberellin receptor GID1L3 OS=Arabidopsis thaliana GN=GID1L3 PE=1 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 6.186e-21
Identity = 66/186 (35.48%), Postives = 92/186 (49.46%), Query Frame = 2
Query:  221 VPPSFDPKTSVDSKDVVYSPENNLSARLYIPKNTN---------NP--NHKLPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHYPDFE-RVFIYGDSAGGNIAHHMVMRLPREFSTVLMLVGLVLTHTYFWGKEPVGDE 742
            VP + +P   V S DV+   + NL +R+Y P +           NP     +P++V+ +GG F   SA    Y      LV     + VSV++RRAPEN  PCA++D WA LKWV S         WL    D + R+F+ GDS+GGNI H++ +R       VL   G +L +  F G E    E
Sbjct:   53 VPANANPVNGVFSFDVIIDRQTNLLSRVYRPADAGTSPSITDLQNPVDGEIVPVIVFFHGGSFAHSSANSAIYDTLCRRLVGLCGAVVVSVNYRRAPENRYPCAYDDGWAVLKWVNS-------SSWLRSKKDSKVRIFLAGDSSGGNIVHNVAVRAVESRIDVL---GNILLNPMFGGTERTESE 228          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: GI1L1_ARATH (Probable gibberellin receptor GID1L1 OS=Arabidopsis thaliana GN=GID1L1 PE=1 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 3.394e-19
Identity = 63/188 (33.51%), Postives = 90/188 (47.87%), Query Frame = 2
Query:  221 VPPSFDPKTSVDSKDVVYSPENNLSARLYIPKNTNNPNHK-------------LPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHYPDFE-RVFIYGDSAGGNIAHHMVMRLPREFSTVLMLVGLVLTHTYFWGKEPVGDE 742
            V  + +P   V S DV+     NL +R+Y P   +                  +P++++ +GG F   SA    Y      LV   K + VSV++RRAPENP PCA++D W AL WV S +       WL    D +  +F+ GDS+GGNIAH++ +R       VL   G +L +  F G E    E
Sbjct:   53 VTANANPVDGVFSFDVLIDRRINLLSRVYRPAYADQEQPPSILDLEKPVDGDIVPVILFFHGGSFAHSSANSAIYDTLCRRLVGLCKCVVVSVNYRRAPENPYPCAYDDGWIALNWVNSRS-------WLKSKKDSKVHIFLAGDSSGGNIAHNVALRAGESGIDVL---GNILLNPMFGGNERTESE 230          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: GI1L2_ARATH (Probable gibberellin receptor GID1L2 OS=Arabidopsis thaliana GN=GID1L2 PE=1 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 1.290e-18
Identity = 67/192 (34.90%), Postives = 92/192 (47.92%), Query Frame = 2
Query:  221 VPPSFDPKTSVDSKDVVYSPENNLSARLYIPKNTNNPNHK--------------LPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHYPDFERVFIY--GDSAGGNIAHHMVMRLPREFSTVLMLVGLVLTHTYFWGKEPVGDETT 748
            VP +  P   V S D V S   NL  R+Y P +  +                  +P++++ +GG F   SA    Y  +   LV    V+ VSVD+RR+PE+  PCA++D W AL WV S         WL    D   V++Y  GDS+GGNIAH++ +R   E   VL   G +L H  F G+E    E T
Sbjct:   53 VPANSFPLDGVFSFDHVDST-TNLLTRIYQPASLLHQTRHGTLELTKPLSTTEIVPVLIFFHGGSFTHSSANSAIYDTFCRRLVTICGVVVVSVDYRRSPEHRYPCAYDDGWNALNWVKSRV-------WLQSGKD-SNVYVYLAGDSSGGNIAHNVAVRATNEGVKVL---GNILLHPMFGGQERTQSEKT 232          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: GID1_ORYSJ (Gibberellin receptor GID1 OS=Oryza sativa subsp. japonica GN=GID1 PE=1 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 1.862e-17
Identity = 66/210 (31.43%), Postives = 99/210 (47.14%), Query Frame = 2
Query:  185 DGRVERLIGNEI---VPPSFDPKTSVDSKDVVYSPENNLSARLY-------------------IPKNTNNPNHK-LPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHYPDFE-RVFIYGDSAGGNIAHHMVMRLPREFSTVLMLVGLVLTHTYFWGKEPVGDE 742
            DG  ER +G  +   VP +  P   V S D +      L  R+Y                   +   T+ P  +  P++++ +GG F   SA    Y +     V  +K + VSV++RRAPE+  PCA++D W ALKWV S       + ++    D + RVF+ GDS+GGNIAHH+ +R   E    + + G +L +  F G E    E
Sbjct:   38 DGTFERDLGEYLDRRVPANARPLEGVSSFDHIIDQSVGLEVRIYRAAAEGDAEEGAAAVTRPILEFLTDAPAAEPFPVIIFFHGGSFVHSSASSTIYDSLCRRFVKLSKGVVVSVNYRRAPEHRYPCAYDDGWTALKWVMS-------QPFMRSGGDAQARVFLSGDSSGGNIAHHVAVRAADE---GVKVCGNILLNAMFGGTERTESE 237          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: AAAD_RABIT (Arylacetamide deacetylase OS=Oryctolagus cuniculus GN=AADAC PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 3.077e-12
Identity = 49/143 (34.27%), Postives = 72/143 (50.35%), Query Frame = 2
Query:  239 PKTSVDSKDVVYSPENNLSARLYIPKNTNNPNHKLPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHY-PDFERVFIYGDSAGGNIAHHMVMRLPRE 664
            P TS ++  V  +  NN+  R+Y+PK  +    +   + YI+GGG+C+ SA    Y            V+ VS ++R APE   P   ED + ALKW          +D L  Y  D ERV + GDSAGGN+A  +  +L ++
Sbjct:   71 PPTSDENVTVTETTFNNVPVRVYVPKRKSKTLRRG--LFYIHGGGWCVGSAALSGYDLLSRRTADRLDVVVVSTNYRLAPEYHFPIQFEDVYDALKWFLR-------QDVLEKYGVDPERVGVSGDSAGGNLAAAVAQQLIKD 204          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: LIP2_MORS1 (Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 PE=1 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 44/138 (31.88%), Postives = 67/138 (48.55%), Query Frame = 2
Query:  230 SFDPKTSVDSKDVVYSPENNLSARLYIPKNTNNPNHKLP---LVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHYPDFERVFIYGDSAGGNIA 634
            S +   S   K +  +   +++ R Y  K+T N   K      +++ +GGGFCI      T+H + +T+  +     VSVD+R APE P P A +D  AA  W+A H+   G            R+ + GDSAGG +A
Sbjct:  119 STENAVSWQDKTIANADGGDMTVRCY-QKSTQNSERKSTDEAAMLFFHGGGFCIGDI--DTHHEFCHTVCAQTGWAVVSVDYRMAPEYPAPTALKDCLAAYAWLAEHSQSLGASP--------SRIVLSGDSAGGCLA 245          
BLAST of EY753616 vs. ExPASy Swiss-Prot
Match: AAAD_MOUSE (Arylacetamide deacetylase OS=Mus musculus GN=Aadac PE=1 SV=3)

HSP 1 Score: 68.1662 bits (165), Expect = 7.579e-11
Identity = 45/140 (32.14%), Postives = 71/140 (50.71%), Query Frame = 2
Query:  239 PKTSVDSKDVVYSPENNLSARLYIPKNTNNPNHKLPLVVYIYGGGFCIYSAIHPTYHNYVNTLVFEAKVIAVSVDHRRAPENPVPCAHEDSWAALKWVASHADGQGPEDWLNHY-PDFERVFIYGDSAGGNIAHHMVMRL 655
            P TS +   V+ +  +++  R+YIPK  +    +   + YI+GGG+C+ SA H +Y         +   + VS D+  AP++  P   ED + +L+W          ED L  Y  D  RV + GDSAGGN+A  +  +L
Sbjct:   71 PPTSDEHVTVMETAFDSVPVRIYIPKRKSMALRRG--LFYIHGGGWCLGSAAHFSYDTLSRWTAHKLDAVVVSTDYGLAPKHHFPRQFEDVYRSLRWFLQ-------EDVLEKYGVDPRRVGVSGDSAGGNLAAAVTQQL 201          
The following BLAST results are available for this feature:
BLAST of EY753616 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 7
Match NameE-valueIdentityDescription
GI1L3_ARATH6.186e-2135.48Probable gibberellin receptor GID1L3 OS=Arabidopsi... [more]
GI1L1_ARATH3.394e-1933.51Probable gibberellin receptor GID1L1 OS=Arabidopsi... [more]
GI1L2_ARATH1.290e-1834.90Probable gibberellin receptor GID1L2 OS=Arabidopsi... [more]
GID1_ORYSJ1.862e-1731.43Gibberellin receptor GID1 OS=Oryza sativa subsp. j... [more]
AAAD_RABIT3.077e-1234.27Arylacetamide deacetylase OS=Oryctolagus cuniculus... [more]
LIP2_MORS17.579e-1131.88Lipase 2 OS=Moraxella sp. (strain TA144) GN=lip2 P... [more]
AAAD_MOUSE7.579e-1132.14Arylacetamide deacetylase OS=Mus musculus GN=Aadac... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-H06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753616 ID=EY753616; Name=EY753616; organism=Citrus sinensis; type=EST; length=909bp
ATTTTTTCCAAAATACAACATGTTCCTTTCTCTCTTTACTACCATATAGG
TCACAGTACAAAAGCCTCCCTATATTATTATTATATTTTTTCAGCTCAAT
TTAATCTTTCCTATGGATTCCTCAAACTCAAAGCCAGCAGCTGAAGTAGC
CCAGGACGTGTCTCCCATGTTTAAAATATACGAAGACGGCAGAGTGGAGA
GGCTTATAGGCAACGAGATAGTTCCCCCATCCTTTGATCCAAAAACAAGC
GTTGATTCCAAAGACGTTGTGTATTCACCTGAAAATAATCTATCCGCCCG
GCTTTACATCCCCAAAAACACAAACAATCCAAACCACAAACTCCCTCTAG
TGGTTTATATCTATGGCGGAGGCTTTTGCATTTATTCTGCCATTCATCCA
ACTTACCATAATTATGTTAATACCCTGGTCTTTGAAGCTAAGGTTATTGC
AGTCTCCGTTGACCATCGACGAGCTCCTGAGAATCCTGTCCCTTGTGCTC
ATGAAGATTCATGGGCTGCACTTAAATGGGTTGCTTCCCATGCTGATGGA
CAAGGCCCTGAAGATTGGCTTAACCATTATCCTGATTTTGAGCGAGTTTT
TATTTATGGGGACAGTGCTGGAGGTAATATAGCTCATCACATGGTGATGA
GACTCCCTCGAGAATTCTCGACGGTTTTAATGTTGGTGGGATTGGTTTTA
ACTCATACCTATTTTTGGGGAAAAGAACCTGTTGGTGATGAGACAACTGA
TGCCGAANCTAGAGCTTCATAAAAAAAATGTGCGAGCTGCTTGTCCTGGT
ACAAGTGGGTGCGATGATCCGCAATTTATCCGTTCGTCGTTCGAGTCTAG
TGACCCTCAGTGCAAAAGGTGCAGTTCATTGTGCAAAAAGGATTGATGAA
AAAAAAGAG
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