EY753608

Overview
NameEY753608
Unique NameEY753608
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length879
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_ANASP (RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.590e-26
Identity = 65/193 (33.68%), Postives = 112/193 (58.03%), Query Frame = 3
Query:   78 QEGLKQPTIFSAERALNSRGR-RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653
            Q   K  T  S    L   GR RL+ A  E E+++ +  +  LER++  L ++  +  R + WA+A  +     +  L  G   ++++++S   LV+ +A+ Y   G+ F DL+Q G++G+++ AE+FDH +GYKFSTY  +WIR++I++ +A  +R I++P  L   IS+I+K  K L+   G+ P + E A
Sbjct:   71 QSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIA 263          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD1_SYNE7 (RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2)

HSP 1 Score: 112.849 bits (281), Expect = 2.539e-24
Identity = 58/171 (33.92%), Postives = 102/171 (59.65%), Query Frame = 3
Query:  141 RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653
            RL+ A  E E+++ +  +  LERI+  L ++  +      WA A        ++ L  G   ++++++S   LV+ +A+ Y   G+ F DL+Q G++G+++ AE+FDH +GYKFSTY  +WIR++I++ +A  +R I++P  L   IS+I+K  K L+   G+ P + E A
Sbjct:  102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIA 272          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD3_SYNE7 (RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1)

HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22
Identity = 54/163 (33.13%), Postives = 96/163 (58.90%), Query Frame = 3
Query:  144 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNC-WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 629
            L+    E  + K VQ    L+ ++ TL+ E G     +  WA AAG+S   L+Q    G   + ++I++   LV+ +A+ Y    +   DL+Q G +G+ +G E+FD T+GY+FSTY  +WIR++I++ +A  AR I++P  +  +++KI+K ++ L+   G+
Sbjct:   24 LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGR 186          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MICAE (RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1)

HSP 1 Score: 103.99 bits (258), Expect = 1.179e-21
Identity = 58/177 (32.77%), Postives = 97/177 (54.80%), Query Frame = 3
Query:  123 LNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653
            L  R  ++++ ++E E          L  IK  L K    A  L  W   +       K+ L  G   +E++++S   LV+ +A+ Y   G+ F DL+Q G++G+++ AE+FDH +GYKFSTY  +WIR++I++ +A  +R I++P  L   IS+I+K  K L+    + P + E A
Sbjct:  121 LFERIEKIIVEKSEKE--------PKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIA 289          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_THEMA (RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3)

HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21
Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 3
Query:  327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665
            +E+LI S   LV+ +A+ Y G G+ F DL+Q GN+G+L+  E+FD  +GYKFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + R+     HG+ P   E AK  G
Sbjct:  156 KEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMG 268          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_SYNY3 (RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20
Identity = 46/134 (34.33%), Postives = 83/134 (61.94%), Query Frame = 3
Query:  255 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            N W+Q    +    ++ L      ++++++S   LV+ +A+ Y   G+ F DL+Q G++G+++ AE+FDH +GYKFSTY  +WIR++I++ +A  +R I++P  L   IS+I+K  K L+    + P + E A+
Sbjct:  166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAE 299          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCTU (RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20
Identity = 61/208 (29.33%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   66 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            SEAL++  K   + ++  ++ +  ++     L+ A  E E++K ++      ++ T L +   K                   Q     W CR+       L+++   LV+ LA+ Y G G+ F DL+Q GN+G+++  E+FD+T+GYKFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P   E AK
Sbjct:  209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 401          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCBO (RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20
Identity = 61/208 (29.33%), Postives = 108/208 (51.92%), Query Frame = 3
Query:   66 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656
            SEAL++  K   + ++  ++ +  ++     L+ A  E E++K ++      ++ T L +   K                   Q     W CR+       L+++   LV+ LA+ Y G G+ F DL+Q GN+G+++  E+FD+T+GYKFSTY  +WIR++I++ +A  AR I+IP  +   I+K+ + ++ L    G+ P   E AK
Sbjct:  209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 401          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIN (RNA polymerase sigma factor rpoD OS=Leptospira interrogans GN=rpoD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 49/170 (28.82%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  159 NEAEMSKGVQVVANLERIKTTLEKESGKAAR-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665
            N  E+ + ++ + N ER    +E+E+G   + +  W +     ER + Q        ++EL+K+   LV+ +A+ Y   G+ F DL+Q GN+G+++  ++F++ +GYKFSTY  +WIR++I++ ++  AR I++P  +  +++K+ +  +      G+ P + E A+  G
Sbjct:  298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLG 460          
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIC (RNA polymerase sigma factor rpoD OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20
Identity = 49/170 (28.82%), Postives = 98/170 (57.65%), Query Frame = 3
Query:  159 NEAEMSKGVQVVANLERIKTTLEKESGKAAR-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665
            N  E+ + ++ + N ER    +E+E+G   + +  W +     ER + Q        ++EL+K+   LV+ +A+ Y   G+ F DL+Q GN+G+++  ++F++ +GYKFSTY  +WIR++I++ ++  AR I++P  +  +++K+ +  +      G+ P + E A+  G
Sbjct:  298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLG 460          
The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 91
Match NameE-valueIdentityDescription
RPOD_ANASP1.590e-2633.68RNA polymerase sigma factor rpoD OS=Anabaena sp. (... [more]
RPOD1_SYNE72.539e-2433.92RNA polymerase sigma factor rpoD1 OS=Synechococcus... [more]
RPOD3_SYNE71.067e-2233.13RNA polymerase sigma factor rpoD3 OS=Synechococcus... [more]
RPOD_MICAE1.179e-2132.77RNA polymerase sigma factor rpoD1 OS=Microcystis a... [more]
RPOD_THEMA4.481e-2142.48RNA polymerase sigma factor rpoD OS=Thermotoga mar... [more]
RPOD_SYNY31.703e-2034.33RNA polymerase sigma factor rpoD OS=Synechocystis ... [more]
RPOD_MYCTU2.905e-2029.33RNA polymerase sigma factor rpoD OS=Mycobacterium ... [more]
RPOD_MYCBO2.905e-2029.33RNA polymerase sigma factor rpoD OS=Mycobacterium ... [more]
RPOD_LEPIN3.794e-2028.82RNA polymerase sigma factor rpoD OS=Leptospira int... [more]
RPOD_LEPIC3.794e-2028.82RNA polymerase sigma factor rpoD OS=Leptospira int... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-G10-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bp
AAAAGAATTTGAAGACAGCAAGGGTATCAGAAGAATCCATTGAAACTTAT
TTGCTGTCTTTGCCTTCAGAAGCCTTGCAAGAAGGCTTAAAGCAGCCCAC
TATCTTTTCAGCAGAAAGAGCATTGAACTCTAGAGGTAGGCGATTGATGA
TTGCCAGAAACGAGGCAGAAATGTCCAAGGGAGTTCAGGTGGTTGCCAAC
CTGGAGAGGATAAAAACAACTCTGGAAAAAGAAAGTGGGAAAGCAGCCAG
ATTGAATTGCTGGGCTCAAGCAGCTGGAGTCAGTGAGAGGGTGCTGAAAC
AGCATCTGGCTTTTGGTTGGTATTGCAGAGAAGAGCTGATAAAGAGTACT
CGCCCCTTAGTGTTATTCCTTGCGAGAAACTACAGGGGTCTAGGAATACC
GTTTTCAGACTTGCTCCAGGCTGGAAATGTTGGTGTTCTACAAGGCGCAG
AGAGGTTCGACCACACAAGGGGATACAAATTCTCAACTTATGTCCAGTAC
TGGATAAGGAAGTCAATATCAAAGATGGTGGCAAGGCATGCTAGAGGAAT
CAAAATTCCTTGCAAATTAAACAGGGAAATAAGTAAGATTCAGAAAGCTC
GAAAAGCCCTGACCAACAGCCATGGGAAATACCCAGAAGACATTGAAAAT
GCCAAGTACACGGGTCTTTCTTTTGGCTGAAATCAGATCAGCTAGTGAAT
GCCTAAGAATTGTGGGGTCAATTGATCAGAAAATGGGGGATGGNCTAATG
CTAAATATTGGGATGAATTCAACTGTTTTTTCATGCATGTAAAATCCCCA
ACATTAAGCTGTAGGCGGCCTTTTCTGCTCATTGAATTTGACCATAGAAT
GAAGTTGCCTTCCGTTTCAAAAATTGGGT
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