EY753608
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_ANASP (RNA polymerase sigma factor rpoD OS=Anabaena sp. (strain PCC 7120) GN=rpoD PE=3 SV=1) HSP 1 Score: 120.168 bits (300), Expect = 1.590e-26 Identity = 65/193 (33.68%), Postives = 112/193 (58.03%), Query Frame = 3 Query: 78 QEGLKQPTIFSAERALNSRGR-RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653 Q K T S L GR RL+ A E E+++ + + LER++ L ++ + R + WA+A + + L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + E A Sbjct: 71 QSKKKHYTEDSIRLYLQEIGRIRLLRADEEIELARKIADLLELERVRERLSEKLERDPRDSEWAEAVQLPLPAFRYRLHIGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIA 263
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD1_SYNE7 (RNA polymerase sigma factor rpoD1 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD1 PE=3 SV=2) HSP 1 Score: 112.849 bits (281), Expect = 2.539e-24 Identity = 58/171 (33.92%), Postives = 102/171 (59.65%), Query Frame = 3 Query: 141 RLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653 RL+ A E E+++ + + LERI+ L ++ + WA A ++ L G ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ G+ P + E A Sbjct: 102 RLLRADEEIELARQIADLLALERIRDELLEQLDRLPSDAEWAAAVDSPLDEFRRRLFRGRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMGRKPTEEEIA 272
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD3_SYNE7 (RNA polymerase sigma factor rpoD3 OS=Synechococcus elongatus (strain PCC 7942) GN=rpoD3 PE=3 SV=1) HSP 1 Score: 107.457 bits (267), Expect = 1.067e-22 Identity = 54/163 (33.13%), Postives = 96/163 (58.90%), Query Frame = 3 Query: 144 LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNC-WAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGK 629 L+ E + K VQ L+ ++ TL+ E G + WA AAG+S L+Q G + ++I++ LV+ +A+ Y + DL+Q G +G+ +G E+FD T+GY+FSTY +WIR++I++ +A AR I++P + +++KI+K ++ L+ G+ Sbjct: 24 LLTHEEEVVLGKRVQQWMKLQELRQTLQSEEGDRDPSDLEWAAAAGLSIEELRQQQHLGEQAKRKMIEANLRLVVSVAKKYLKRNMDLLDLIQEGTIGMQRGVEKFDPTKGYRFSTYAYWWIRQAITRAIAEKARTIRLPIHITEKLNKIKKMQRQLSQQLGR 186
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MICAE (RNA polymerase sigma factor rpoD1 OS=Microcystis aeruginosa GN=rpoD1 PE=3 SV=1) HSP 1 Score: 103.99 bits (258), Expect = 1.179e-21 Identity = 58/177 (32.77%), Postives = 97/177 (54.80%), Query Frame = 3 Query: 123 LNSRGRRLMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENA 653 L R ++++ ++E E L IK L K A L W + K+ L G +E++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + E A Sbjct: 121 LFERIEKIIVEKSEKE--------PKLSDIKAYLGKTELTAPLLEEWLAKSKEYLSAFKRRLYHGRRAKEKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKILSQEMRRKPTEEEIA 289
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_THEMA (RNA polymerase sigma factor rpoD OS=Thermotoga maritima GN=rpoD PE=1 SV=3) HSP 1 Score: 102.064 bits (253), Expect = 4.481e-21 Identity = 48/113 (42.48%), Postives = 73/113 (64.60%), Query Frame = 3 Query: 327 REELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 +E+LI S LV+ +A+ Y G G+ F DL+Q GN+G+L+ E+FD +GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + R+ HG+ P E AK G Sbjct: 156 KEKLITSNLRLVVSIAKRYMGRGLSFQDLIQEGNIGLLKAVEKFDWRKGYKFSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLNRLRREYYQKHGEEPSIEELAKMMG 268
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_SYNY3 (RNA polymerase sigma factor rpoD OS=Synechocystis sp. (strain PCC 6803) GN=rpoD PE=3 SV=1) HSP 1 Score: 100.138 bits (248), Expect = 1.703e-20 Identity = 46/134 (34.33%), Postives = 83/134 (61.94%), Query Frame = 3 Query: 255 NCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 N W+Q + ++ L ++++++S LV+ +A+ Y G+ F DL+Q G++G+++ AE+FDH +GYKFSTY +WIR++I++ +A +R I++P L IS+I+K K L+ + P + E A+ Sbjct: 166 NEWSQQPNKNFAAFRRRLFLDRRAKDKMVQSNLRLVVSIAKKYMNRGLSFQDLIQEGSLGLIRAAEKFDHEKGYKFSTYATWWIRQAITRAIADQSRTIRLPVHLYETISRIKKTTKLLSQEMRRKPTEEEIAE 299
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCTU (RNA polymerase sigma factor rpoD OS=Mycobacterium tuberculosis GN=rpoD PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20 Identity = 61/208 (29.33%), Postives = 108/208 (51.92%), Query Frame = 3 Query: 66 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 SEAL++ K + ++ ++ + ++ L+ A E E++K ++ ++ T L + K Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E AK Sbjct: 209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 401
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_MYCBO (RNA polymerase sigma factor rpoD OS=Mycobacterium bovis GN=rpoD PE=3 SV=1) HSP 1 Score: 99.3673 bits (246), Expect = 2.905e-20 Identity = 61/208 (29.33%), Postives = 108/208 (51.92%), Query Frame = 3 Query: 66 SEALQEGLKQPTIFSAERALNSRGRR-----LMIARNEAEMSKGVQVVANLERIKTTLEKESGKAARLNCWAQAAGVSERVLKQHLAFGWYCRE------ELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAK 656 SEAL++ K + ++ ++ + ++ L+ A E E++K ++ ++ T L + K Q W CR+ L+++ LV+ LA+ Y G G+ F DL+Q GN+G+++ E+FD+T+GYKFSTY +WIR++I++ +A AR I+IP + I+K+ + ++ L G+ P E AK Sbjct: 209 SEALRQARKDAELTASADSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTELSERGEKLPAA---------------QRRDMMWICRDGDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFDYTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQRELLQDLGREPTPEELAK 401
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIN (RNA polymerase sigma factor rpoD OS=Leptospira interrogans GN=rpoD PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20 Identity = 49/170 (28.82%), Postives = 98/170 (57.65%), Query Frame = 3 Query: 159 NEAEMSKGVQVVANLERIKTTLEKESGKAAR-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 N E+ + ++ + N ER +E+E+G + + W + ER + Q ++EL+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++I++ ++ AR I++P + +++K+ + + G+ P + E A+ G Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLG 460
BLAST of EY753608 vs. ExPASy Swiss-Prot
Match: RPOD_LEPIC (RNA polymerase sigma factor rpoD OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=rpoD PE=3 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 3.794e-20 Identity = 49/170 (28.82%), Postives = 98/170 (57.65%), Query Frame = 3 Query: 159 NEAEMSKGVQVVANLERIKTTLEKESGKAAR-LNCWAQAAGVSERVLKQHLAFGWYCREELIKSTRPLVLFLARNYRGLGIPFSDLLQAGNVGVLQGAERFDHTRGYKFSTYVQYWIRKSISKMVARHARGIKIPCKLNREISKIQKARKALTNSHGKYPEDIENAKYTG 665 N E+ + ++ + N ER +E+E+G + + W + ER + Q ++EL+K+ LV+ +A+ Y G+ F DL+Q GN+G+++ ++F++ +GYKFSTY +WIR++I++ ++ AR I++P + +++K+ + + G+ P + E A+ G Sbjct: 298 NIDEVREVIKDIRNNERKLRRMEQEAGSTVQEIKDWGEKIIKGEREISQ-------AKKELVKANLRLVVSIAKRYANRGMHFFDLIQEGNIGLIKAVDKFEYKKGYKFSTYATWWIRQAITRAISDQARTIRVPVHMIEQVNKVIRETRLFIQEFGRDPNNEEIAERLG 460 The following BLAST results are available for this feature:
BLAST of EY753608 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 91
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Sequences
The
following sequences are available for this feature:
EST sequence >EY753608 ID=EY753608; Name=EY753608; organism=Citrus sinensis; type=EST; length=879bpback to top |