EY753592

Overview
NameEY753592
Unique NameEY753592
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length882
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig13101 contig Csv1_Contig13101:1..883. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753592 vs. ExPASy Swiss-Prot
Match: IF41_WHEAT (Eukaryotic initiation factor iso-4F subunit p82-34 OS=Triticum aestivum PE=1 SV=2)

HSP 1 Score: 192.586 bits (488), Expect = 2.550e-48
Identity = 117/248 (47.18%), Postives = 151/248 (60.89%), Query Frame = 1
Query:  142 LPPHGGVASAF-KMGDLRFEGHERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQA------RYLEADNRDWRTRSTTSG-----QEKSLEANQEKMEFGAHEGQLNSQFASAQISTNQGA--GPAPALIKAEVPWSARRGNLSEKDRVLKNCKGILNKLTPEKFDVLKGQLIDSGIQPXIF*RVVLNLYLKGLSWSLHFGP-WLHFYALT*QRASSISFEEPGGK 840
            L PHGG AS   ++GDL  E  ERVRY+R+QLL L+++  +TE IL+++QEIE+E +G+ QSW     N  LQ+Q Q       R+ E DNRDWR R+         +EKS +  +E  E     G+   QF     S++Q A  GP PALIKA+VPWSARRGNLSEKDRVLK  KGILNKLTPEKFD+LKGQL+DSGI      + V++L  +   +   F P +    +       +   EEPGGK
Sbjct:   40 LRPHGGGASGVSRIGDLHSESRERVRYSRDQLLDLRKITDVTEQILRLQQEIEAELNGDDQSWVRNDSNVQLQTQAQPQVQAQNRFTETDNRDWRARTEKPPAPAVQEEKSWDNIREVKEQYNASGRQQEQFNRQDQSSSQKAQVGPPPALIKADVPWSARRGNLSEKDRVLKTVKGILNKLTPEKFDLLKGQLLDSGITTADILKDVISLIFEKAVFEPTFCPMYAQLCSELNDNLPTFPSEEPGGK 287          
BLAST of EY753592 vs. ExPASy Swiss-Prot
Match: C3H43_ORYSJ (Zinc finger CCCH domain-containing protein 43 OS=Oryza sativa subsp. japonica GN=Os06g0520600 PE=2 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 1.146e-24
Identity = 67/189 (35.45%), Postives = 101/189 (53.44%), Query Frame = 1
Query:  202 HERVRYTREQLLQLKEVAQLTEDILKIKQEIESEFDGEGQSWGGRAENNNLQSQFQARYLEADNRDWRTRSTTSGQEKSLEAN----QEKMEFGAHEGQLNSQFASA--------QISTNQGAGPAPALIKAEVPWSARRGNLSEKDRVLKNCKGILNKLTPEKFDVLKGQLIDSGIQPXIF*RVVLNL 732
            H+R+ YTR+QLLQL +  ++ +DILK  Q+I  E +GE +  G  AE +++Q+    R+   D+RDW + S  +  E+    N    +E    G  + + N    S+         +   +       LIKAEVP S +RG +S KD VLK  K ILN  +P+ FD+ KGQLI++ I      + V+NL
Sbjct:  235 HQRISYTRDQLLQLCQNVEVPKDILKFCQDINVELNGEDKISGFGAEKDHVQTPSYKRFDATDSRDWHSWSAQTNWEQKFWDNFSEAKEPYSLGWKQEKFNKPDQSSFHFDSKDQWLKFIKCTPCKSTLIKAEVPLSIQRGIISGKDEVLKTLKSILNTFSPKMFDLQKGQLIETRISSADILKDVINL 423          

HSP 2 Score: 32.3426 bits (72), Expect = 1.146e-24
Identity = 17/37 (45.95%), Postives = 21/37 (56.76%), Query Frame = 3
Query:  708 ILKGGIELIFERAVLEPTFWPMVALLCSDLTKSFLHF 818
            ILK  I LIFE+ V EP F    A LC+ L ++   F
Sbjct:  416 ILKDVINLIFEKVVAEPAFCSTYAQLCTYLNQNLTPF 452          
The following BLAST results are available for this feature:
BLAST of EY753592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 2
Match NameE-valueIdentityDescription
IF41_WHEAT2.550e-4847.18Eukaryotic initiation factor iso-4F subunit p82-34... [more]
C3H43_ORYSJ1.146e-2435.45Zinc finger CCCH domain-containing protein 43 OS=O... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-F06-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753592 ID=EY753592; Name=EY753592; organism=Citrus sinensis; type=EST; length=882bp
CCTTTTTCTGTGAGTATTATGCAGGCAGCAGATCACACGGTGATAAGCTT
GAGACCCGGTGGCGGCGGCGGTCCACGTGGCACCAGATTGTTCACTCATC
GCTTCGATTCCTCATCAACACCCTCGTCTGATTCTCAAACTCTTCCCCCT
CATGGCGGCGTCGCTTCCGCTTTCAAGATGGGGGACTTGCGGTTTGAAGG
TCATGAACGTGTTCGATACACCCGAGAGCAGCTGTTACAACTTAAGGAGG
TTGCTCAACTAACTGAAGACATTTTGAAGATAAAGCAAGAAATTGAGTCT
GAGTTTGATGGCGAAGGTCAAAGCTGGGGTGGTCGTGCAGAAAATAACAA
TCTGCAATCTCAATTCCAAGCTCGTTACTTGGAGGCAGACAATCGTGATT
GGCGTACTCGATCAACCACCTCTGGACAAGAGAAATCCTTGGAAGCAAAT
CAAGAAAAGATGGAATTTGGTGCTCATGAGGGCCAACTTAATTCCCAGTT
CGCAAGTGCTCAAATCTCCACTAACCAAGGGGCAGGACCTGCTCCAGCTC
TAATTAAGGCTGAAGTTCCATGGTCAGCAAGACGAGGAAATCTCTCAGAG
AAGGATCGTGTTCTTAAGAACTGTAAAGGAATACTGAATAAATTGACTCC
AGAGAAATTTGATGTTCTCAAGGGTCAGCTAATAGACTCTGGAATACAAC
CCCANATATTCTGAAGGGTGGTATTGAACTTATATTTGAAAGGGCTGTCT
TGGAGCCTACATTTTGGCCCATGGTTGCACTTTTATGCTCTGACTTAACA
AAGAGCTTCCTCCATTTCCTTCGAAGAGCCTGGGGGGAAAAATTACCCTT
AAGCGGATCCTTTTAATCTGGCAGGAGGCTTT
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