EY753582 | Citrus Genome Database

Overview


Name	EY753582
Unique Name	EY753582
Type	EST
Organism	Citrus sinensis (Sweet orange)
Sequence length	867

Libraries


Library Name	Type
Sweet orange leaf, field plant A	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Homology

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_GOSHI (40S ribosomal protein S4 OS=Gossypium hirsutum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 150.214 bits (378), Expect = 1.411e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            P+HWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHV+VD KVRTDKTYPAGFM + S
Sbjct:   15 PRHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVMVDGKVRTDKTYPAGFMDVVS 91

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_ORYSJ (40S ribosomal protein S4 OS=Oryza sativa subsp. japonica GN=RPS4 PE=2 SV=3)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVIS 91

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_MAIZE (40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.842e-35
Identity = 71/77 (92.21%), Postives = 74/77 (96.10%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILI+RNRLKYALTYREVI+ILMQRHVLVD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILIIRNRLKYALTYREVISILMQRHVLVDGKVRTDKTYPAGFMDVIS 91

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS43_ARATH (40S ribosomal protein S4-3 OS=Arabidopsis thaliana GN=RPS4D PE=2 SV=2)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91

HSP 2 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query:  482 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 580
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS42_ARATH (40S ribosomal protein S4-2 OS=Arabidopsis thaliana GN=RPS4B PE=2 SV=4)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91

HSP 2 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query:  482 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 580
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS41_ARATH (40S ribosomal protein S4-1 OS=Arabidopsis thaliana GN=RPS4A PE=2 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 1.194e-34
Identity = 68/77 (88.31%), Postives = 73/77 (94.81%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPL+LI+RNRLKYALTYREVI+ILMQRH+ VD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVLIIRNRLKYALTYREVISILMQRHIQVDGKVRTDKTYPAGFMDVVS 91

HSP 2 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query:  482 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 580
            DVVSIPKTNENFRLLYDTKGRFRLHSI+DEEAK
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSIKDEEAK 120

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_SOLTU (40S ribosomal protein S4 OS=Solanum tuberosum GN=RPS4 PE=2 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 4.537e-34
Identity = 67/77 (87.01%), Postives = 73/77 (94.81%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPL++I+RNRLKYALTYREVI+ILMQR V+VD KVRTDKTYPAGFM + S
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLVIIMRNRLKYALTYREVISILMQRQVMVDGKVRTDKTYPAGFMDVVS 91

HSP 2 Score: 68.1662 bits (165), Expect = 7.008e-11
Identity = 31/33 (93.94%), Postives = 33/33 (100.00%), Query Frame = 2

Query:  482 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 580
            DVVSIPKTNENFRLLYDTKGRFRLHS+RDEE+K
Sbjct:   88 DVVSIPKTNENFRLLYDTKGRFRLHSLRDEESK 120

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_PRUAR (40S ribosomal protein S4 OS=Prunus armeniaca GN=RPS4 PE=2 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 3.720e-28
Identity = 57/62 (91.94%), Postives = 61/62 (98.39%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKV 207
            PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREV++ILMQRH+LVD K+
Sbjct:   15 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVVSILMQRHILVDGKI 76

HSP 2 Score: 68.9366 bits (167), Expect = 4.109e-11
Identity = 32/33 (96.97%), Postives = 33/33 (100.00%), Query Frame = 2

Query:  482 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEEAK 580
            DVVSIPKTNENFRLLYDTKGRFRLHSIRDEE+K
Sbjct:   84 DVVSIPKTNENFRLLYDTKGRFRLHSIRDEESK 116

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_DICDI (40S ribosomal protein S4 OS=Dictyostelium discoideum GN=rps4 PE=1 SV=3)

HSP 1 Score: 120.553 bits (301), Expect = 1.197e-26
Identity = 58/77 (75.32%), Postives = 63/77 (81.82%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFMGMQS 252
            P HWMLDKL G +AP+PSSGPHK RECLPLIL+LRNRLKYALT +EV  ILMQR V VD KVRTD  YPAGFM + S
Sbjct:   15 PNHWMLDKLSGKWAPRPSSGPHKLRECLPLILVLRNRLKYALTKKEVTLILMQRLVKVDGKVRTDPNYPAGFMDVIS 91

[Close]

BLAST of EY753582 vs. ExPASy Swiss-Prot
Match: RS4_YEAST (40S ribosomal protein S4 OS=Saccharomyces cerevisiae GN=RPS4A PE=1 SV=3)

HSP 1 Score: 118.627 bits (296), Expect = 4.548e-26
Identity = 56/73 (76.71%), Postives = 61/73 (83.56%), Query Frame = 1

Query:   22 PKHWMLDKLGGAFAPKPSSGPHKSRECLPLILILRNRLKYALTYREVIAILMQRHVLVDAKVRTDKTYPAGFM 240
            P HW+LDKL G +AP+PS+GPHK RE LPLI+ LRNRLKYAL  REV AILMQRHV VD KVRTD TYPAGFM
Sbjct:   15 PHHWLLDKLSGCYAPRPSAGPHKLRESLPLIVFLRNRLKYALNGREVKAILMQRHVKVDGKVRTDTTYPAGFM 87

The following BLAST results are available for this feature:

BLAST of EY753582 vs. ExPASy Swiss-Prot

BLAST of EY753582 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 49


Match Name	E-value	Identity	Description
RS4_GOSHI	1.411e-35	92.21	40S ribosomal protein S4 OS=Gossypium hirsutum GN=...	[more]
RS4_ORYSJ	1.842e-35	92.21	40S ribosomal protein S4 OS=Oryza sativa subsp. ja...	[more]
RS4_MAIZE	1.842e-35	92.21	40S ribosomal protein S4 OS=Zea mays GN=RPS4 PE=2 ...	[more]
RS43_ARATH	1.194e-34	88.31	40S ribosomal protein S4-3 OS=Arabidopsis thaliana...	[more]
RS42_ARATH	1.194e-34	88.31	40S ribosomal protein S4-2 OS=Arabidopsis thaliana...	[more]
RS41_ARATH	1.194e-34	88.31	40S ribosomal protein S4-1 OS=Arabidopsis thaliana...	[more]
RS4_SOLTU	4.537e-34	87.01	40S ribosomal protein S4 OS=Solanum tuberosum GN=R...	[more]
RS4_PRUAR	3.720e-28	91.94	40S ribosomal protein S4 OS=Prunus armeniaca GN=RP...	[more]
RS4_DICDI	1.197e-26	75.32	40S ribosomal protein S4 OS=Dictyostelium discoide...	[more]
RS4_YEAST	4.548e-26	76.71	40S ribosomal protein S4 OS=Saccharomyces cerevisi...	[more]

Pages

Properties


Property Name	Value
Genbank description	CS12-C1-001-004-E08-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>EY753582 ID=EY753582; Name=EY753582; organism=Citrus sinensis; type=EST; length=867bp
ACATTTGTAGAGGCTTAATGCCCCAAACACTGGATGCTTGACAAACTTGG
TGGAGCATTTGCTCCCAAGCCTTCATCTGGGCCACACAAATCAAGGGAGT
GTTTGCCCTTAATTCTTATCTTACGCAACCGCTTGAAGTATGCTCTTACA
TACCGAGAAGTCATTGCAATTTTGATGCAACGACATGTGTTGGTTGATGC
TAAGGTTCGCACAGATAAGACTTACCCTGCTGGGTTCATGGGTATGCAGT
CCTCAGCCCATATACTATTATTGCCTTTTATAAATTATCCATGCCTTATT
TGTGAGGAAAATGGAATGTAATAGTAGAATCATTGCTTTTTTGTAGATGC
GGGCTCAAAATCATACTTGTGTTCATGATGATTCCTCCATTTCTGATATC
ATATTCCAAATTTAAGCCTCCTTGATTTACTCTTTCTTTAAGAAGTTTTT
TAAGATTTTTCACTTGTCCTTTTGACTATCAGATGTTGTGTCAATTCCAA
AGACGAATGAGAACTTCCGTCTNCTTTACGACACCAAGGGCCGGTTCCGC
CTTCATTCAATCAGGGATGAGGAGGCTAAGGTTTGTACTGACAGCTCANA
TTACCTGATTGTTTCTCCTTACTTTAATGAGAAGTAATTGTGGGCACCTT
TATTTCTCTTGAACTTANATATTAGGAGGATGCATTATTGNTTTAAAATG
GTATATTAAAGAAACATCTCCTCCGGTAAAGTGCCCTTATTAACTAACTT
TGGGGGGGGGTACCCGGGAACTTTGACTGAAAAATTCTTACGCCCCCATA
ATCCTATCATTGGCAAATATTATCTTGCAAACTCTATTATACTTGGAAAC
TGGGGCTGCTTTGGTTA