EY753578

Overview
NameEY753578
Unique NameEY753578
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length895
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
EY753578_ssr343 microsatellite EY753578_ssr343:343..354. BLAST: Citrus ESTs to Prunus persica proteins V1
Homology
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH7_ARATH (DEAD-box ATP-dependent RNA helicase 7 OS=Arabidopsis thaliana GN=RH7 PE=1 SV=2)

HSP 1 Score: 170.244 bits (430), Expect = 1.386e-41
Identity = 88/133 (66.17%), Postives = 104/133 (78.20%), Query Frame = 1
Query:  412 HPNAVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            +PNAVS+F+IS PLREKLK+ GIE+LFPIQA TFDMVLDG+DL GRARTGQGKTL FVLPILESL NGP K+ +K GYGR+P VLVLLPTR L +  +   +    G   L+SCCL+GG SY   E KLK+G+
Sbjct:   94 NPNAVSKFRISAPLREKLKANGIEALFPIQASTFDMVLDGADLVGRARTGQGKTLAFVLPILESLVNGPAKSKRKMGYGRSPSVLVLLPTRELAKQVA-ADFDAYGGSLGLSSCCLYGGDSYPVQEGKLKRGV 225          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH7_ORYSJ (DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sativa subsp. japonica GN=Os09g0520700 PE=2 SV=1)

HSP 1 Score: 152.525 bits (384), Expect = 2.990e-36
Identity = 81/132 (61.36%), Postives = 97/132 (73.48%), Query Frame = 1
Query:  415 PNAVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            PNA++ F+IS  LREKLKSKGI++LFPIQA TFD+VLDG DL GRARTGQGKTL FVLPILESL NG  KAS++T YGR P VLVLLPTR L +          A  G L++CC++GG  Y   E  ++KG+
Sbjct:  114 PNALANFRISESLREKLKSKGIKALFPIQATTFDLVLDGHDLVGRARTGQGKTLAFVLPILESLVNGTHKASRRTDYGRPPTVLVLLPTRELAKQVHTDFAFYGATFG-LSACCVYGGSDYRSQEMAIRKGV 244          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH7_SPIOL (DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia oleracea GN=RH7 PE=2 SV=1)

HSP 1 Score: 138.272 bits (347), Expect = 5.835e-32
Identity = 73/132 (55.30%), Postives = 95/132 (71.97%), Query Frame = 1
Query:  415 PNAVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            PN++S F+IS PL++ L SKGI++LFPIQAMTFD V+DG DL GRARTGQGKTL FVLPI+ESL NG TK  +++G+GR P VLVLLPTR L  T     + +  G   LT+C ++GG  ++     L +G+
Sbjct:  106 PNSLSNFRISKPLKDVLISKGIKALFPIQAMTFDNVIDGCDLVGRARTGQGKTLAFVLPIVESLVNGRTKDLRRSGHGRLPSVLVLLPTRELA-TQVLADFQVYGGAVGLTACSVYGGAPFHSQISSLTRGV 236          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: DDX21_RAT (Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=Ddx21 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A S F IS    + LK++G+  LFPIQA TF  V  G DL  +ARTG GKT  F +P++E L  G  +  +    GRAP VLVL PTR L    S     +      L+  C +GG  Y G   +++ G+
Sbjct:  183 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYGGQIERMRSGI 305          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: DDX21_MOUSE (Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 PE=1 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 7.656e-16
Identity = 52/130 (40.00%), Postives = 69/130 (53.08%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A S F IS    + LK++G+  LFPIQA TF  V  G DL  +ARTG GKT  F +P++E L  G  +  +    GRAP VLVL PTR L    S     +      L+  C +GG  Y G   +++ G+
Sbjct:  259 AFSNFPISEETVKLLKARGVNFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKLQGGLQERKR----GRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYGGQIERMRSGI 381          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: DDX21_HUMAN (Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 PE=1 SV=5)

HSP 1 Score: 82.4185 bits (202), Expect = 3.800e-15
Identity = 53/130 (40.77%), Postives = 70/130 (53.85%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A S F IS    + LK +G+  LFPIQA TF  V  G DL  +ARTG GKT  F +P++E L +G  +  K+   GRAP VLVL PTR L    S     +      L+  C +GG  Y G   +++ G+
Sbjct:  187 AFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSFAIPLIEKL-HGELQDRKR---GRAPQVLVLAPTRELANQVSKDFSDITK---KLSVACFYGGTPYGGQFERMRNGI 309          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH53_ARATH (DEAD-box ATP-dependent RNA helicase 53 OS=Arabidopsis thaliana GN=RH53 PE=2 SV=1)

HSP 1 Score: 77.7962 bits (190), Expect = 9.359e-14
Identity = 48/116 (41.38%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGG 768
            A+S   IS  + + L SKGIE LFPIQ    +  ++G D+ GRARTG GKTL F +PI++ +     K + K G GR P  LVL PTR L +               L + CL+GG
Sbjct:  105 AISELGISPEIVKALSSKGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKYNAKHGRGRNPLCLVLAPTRELARQVEKE---FRESAPSLDTICLYGG 213          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: DDX50_MOUSE (ATP-dependent RNA helicase DDX50 OS=Mus musculus GN=Ddx50 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 1.222e-13
Identity = 48/130 (36.92%), Postives = 65/130 (50.00%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL  +ARTG GKT  F +P++E L        K     R+P VLVL PTR L    +     +      L+  C +GG SY     +++ G+
Sbjct:  135 AFSNFSISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQSQINQIRNGI 257          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: DDX50_HUMAN (ATP-dependent RNA helicase DDX50 OS=Homo sapiens GN=DDX50 PE=1 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 2.723e-13
Identity = 48/130 (36.92%), Postives = 64/130 (49.23%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGGPSYYGSEFKLKKGL 810
            A S F IS    + LK +G+  LFPIQ  TF  V +G DL  +ARTG GKT  F +P++E L        K     R+P VLVL PTR L    +     +      L+  C +GG SY      ++ G+
Sbjct:  138 AFSNFPISEETIKLLKGRGVTYLFPIQVKTFGPVYEGKDLIAQARTGTGKTFSFAIPLIERLQRNQETIKK----SRSPKVLVLAPTRELANQVAKDFKDITR---KLSVACFYGGTSYQSQINHIRNGI 260          
BLAST of EY753578 vs. ExPASy Swiss-Prot
Match: RH9_ARATH (DEAD-box ATP-dependent RNA helicase 9 OS=Arabidopsis thaliana GN=RH9 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 7.923e-13
Identity = 45/116 (38.79%), Postives = 63/116 (54.31%), Query Frame = 1
Query:  421 AVSRFKISVPLREKLKSKGIESLFPIQAMTFDMVLDGSDLXGRARTGQGKTLXFVLPILESLTNGPTKASKKTGYGRAPGVLVLLPTRGLGQTGS*GLWCLMAGQGDLTSCCLFGG 768
            A++   IS  + + LK +GIE LFPIQ    +  ++G D+ GRARTG GKTL F +PI++ +     K + K G G+ P  LVL PTR L +               L + CL+GG
Sbjct:  117 AIADLGISPEIVKALKGRGIEKLFPIQKAVLEPAMEGRDMIGRARTGTGKTLAFGIPIIDKI----IKFNAKHGRGKNPQCLVLAPTRELARQVEKE---FRESAPSLDTICLYGG 225          
The following BLAST results are available for this feature:
BLAST of EY753578 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RH7_ARATH1.386e-4166.17DEAD-box ATP-dependent RNA helicase 7 OS=Arabidops... [more]
RH7_ORYSJ2.990e-3661.36DEAD-box ATP-dependent RNA helicase 7 OS=Oryza sat... [more]
RH7_SPIOL5.835e-3255.30DEAD-box ATP-dependent RNA helicase 7 OS=Spinacia ... [more]
DDX21_RAT7.656e-1640.00Nucleolar RNA helicase 2 OS=Rattus norvegicus GN=D... [more]
DDX21_MOUSE7.656e-1640.00Nucleolar RNA helicase 2 OS=Mus musculus GN=Ddx21 ... [more]
DDX21_HUMAN3.800e-1540.77Nucleolar RNA helicase 2 OS=Homo sapiens GN=DDX21 ... [more]
RH53_ARATH9.359e-1441.38DEAD-box ATP-dependent RNA helicase 53 OS=Arabidop... [more]
DDX50_MOUSE1.222e-1336.92ATP-dependent RNA helicase DDX50 OS=Mus musculus G... [more]
DDX50_HUMAN2.723e-1336.92ATP-dependent RNA helicase DDX50 OS=Homo sapiens G... [more]
RH9_ARATH7.923e-1338.79DEAD-box ATP-dependent RNA helicase 9 OS=Arabidops... [more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-E04-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753578 ID=EY753578; Name=EY753578; organism=Citrus sinensis; type=EST; length=895bp
CAACTCATTTCNCACATCAAATTTGTAGCAGGAGACGCCCTCTGCTGTTT
CTTTGTATCTCATTTTAATTTTTGTAACTTAACATAACCATTCATGCCTT
CGATCGCTTTGTTTGACGGAAAAGAAGTGAAAGACGAGAAGAAGATGAAT
AAGAAAATGGCTCTCAAGGACTTCGAAGAAACGGAGGCGGCGTTAACTGA
GAAGAGTTCGGATAAGAAGAAGAGCAAGAAGAAGGAGAGTAGTAAGAAGC
GGAAGGAATCGGAGATTGAGGAGGAGGAAGAGAGAAGCGAAACGAGCTCG
GAGTTAGGCGAGCCGGTGAATTTGAAATCGGAGAAGGAGAAAAAGAAGAA
GAAGAAAGCGAAAGTTGAGCCTGAGGCTGGAGTGGAANANCANGAGAGGG
GTGAAAGCGAACATCCGAATGCGGTTTCGAGGTTTAAAATATCGGTGCCA
TTAAGGGAAAAGCTCAAGTCCAAGGGGATTGAGTCTTTGTTTCCTATTCA
AGCTATGACTTTTGATATGGTTCTTGATGGCTCTGATTTANTCGGACGTG
CACGGACCGGTCAAGGTAAAACTTTANCCTTTGTGTTGCCAATTTTAGAG
TCTCTAACGAATGGGCCAACAAAAGCGTCCAAAAAGACTGGATATGGCAG
GGCTCCAGGGGTTTTGGTACTTTTGCCTACTAGGGGATTGGGCCAAACAG
GTTCATGAGGACTTTGGTGTCTAATGGCGGGGCAGGGGGACCTGACCTCT
TGTTGTTTATTTGGAGGACCTTCTTATTATGGCTCAGAGTTTAAATTAAA
GAAGGGGTTGGTGTAATTCTTGGAACCCCGGACCTTTTAGGGTCCCATTG
GGAGGGGCATTTTGATTGAGTTCTTTGAAATTGCGGTCCTTGAGG
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