EY753573

Overview
NameEY753573
Unique NameEY753573
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length946
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of EY753573 vs. ExPASy Swiss-Prot
Match: PSBS_SPIOL (Photosystem II 22 kDa protein, chloroplastic OS=Spinacia oleracea GN=PSBS PE=1 SV=1)

HSP 1 Score: 217.238 bits (552), Expect = 1.005e-56
Identity = 132/236 (55.93%), Postives = 151/236 (63.98%), Query Frame = 3
Query:   84 MAQTMLLMS-GVSTSHAGNLKRDSLVTFQTQMLRP-IFFSHLMFNPLSNEXXXXXXXXXXXXXXXXXXXFXXXXXXXXXXXXVESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLVGES*QGK 785
            MAQ MLLM  GVST++  +LKR++L+  Q Q ++P    S+L F+PL +                                  + K KVED            K+NELFVGRVAMIGFAASLLGEGITGKGIL+QLNLETGIPIYEAEP           GAIGALGDRG+FVDEP   TGL +AVIPPGK +RSALGLK  GP+FGFTKSNELFVGRLAQLG AFSL+GE   GK
Sbjct:    1 MAQAMLLMMPGVSTTNTIDLKRNALLKLQIQKIKPKSSTSNLFFSPLPSSSSSSSTVFKTLALFKSKAKAPKKVE--------KPKLKVEDGLFGTSGGIGFTKENELFVGRVAMIGFAASLLGEGITGKGILSQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGRFVDEP--TTGLEKAVIPPGKDVRSALGLKTKGPLFGFTKSNELFVGRLAQLGFAFSLIGEIITGK 226          

HSP 2 Score: 25.0238 bits (53), Expect = 1.005e-56
Identity = 11/19 (57.89%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  802 HIETWIPINEIDHLCLFTV 858
            +IET +PINEI+ L L  V
Sbjct:  233 NIETGVPINEIEPLVLLNV 251          

HSP 3 Score: 74.3294 bits (181), Expect = 1.115e-12
Identity = 40/75 (53.33%), Postives = 48/75 (64.00%), Query Frame = 3
Query:  387 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 611
            K NELFVGR+A +GFA SL+GE ITGKG LAQLN+ETG+PI E EP            AI      GKF+ + +E
Sbjct:  200 KSNELFVGRLAQLGFAFSLIGEIITGKGALAQLNIETGVPINEIEPLVLLNVVFFFIAAINP--GTGKFITDDEE 272          
BLAST of EY753573 vs. ExPASy Swiss-Prot
Match: PSBS_SOLLC (Photosystem II 22 kDa protein, chloroplastic OS=Solanum lycopersicum GN=PSBS PE=3 SV=1)

HSP 1 Score: 213.386 bits (542), Expect = 8.388e-56
Identity = 111/153 (72.55%), Postives = 119/153 (77.78%), Query Frame = 3
Query:  327 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLVGES*QGK 785
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL +AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS++GE   GK
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGKFVDDPTPPTGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGK 229          

HSP 2 Score: 25.7942 bits (55), Expect = 8.388e-56
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  802 HIETWIPINEIDHLCLFTVS 861
            + ET +PINEI+ L LF ++
Sbjct:  236 NFETGVPINEIEPLLLFNIA 255          

HSP 3 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  387 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 611
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of EY753573 vs. ExPASy Swiss-Prot
Match: PSBS_SOLSG (Photosystem II 22 kDa protein, chloroplastic OS=Solanum sogarandinum GN=PSBS PE=2 SV=1)

HSP 1 Score: 208.379 bits (529), Expect = 2.635e-54
Identity = 108/153 (70.59%), Postives = 118/153 (77.12%), Query Frame = 3
Query:  327 ESKPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLVGES*QGK 785
            + K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGALGDRG+F+D+P   TGL +AVIPPGKS +SALGL EGGP+FGFTK+NELFVGRLAQLGIAFS++GE   GK
Sbjct:   77 KEKQKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALGDRGRFIDDPAPATGLEKAVIPPGKSFKSALGLSEGGPLFGFTKANELFVGRLAQLGIAFSIIGEIITGK 229          

HSP 2 Score: 25.7942 bits (55), Expect = 2.635e-54
Identity = 10/20 (50.00%), Postives = 15/20 (75.00%), Query Frame = 1
Query:  802 HIETWIPINEIDHLCLFTVS 861
            + ET +PINEI+ L LF ++
Sbjct:  236 NFETGVPINEIEPLLLFNIA 255          

HSP 3 Score: 70.0922 bits (170), Expect = 2.103e-11
Identity = 38/75 (50.67%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  387 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 611
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKF+ + +E
Sbjct:  203 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIAFFFFAAINP--GTGKFITDEEE 275          
BLAST of EY753573 vs. ExPASy Swiss-Prot
Match: PSBS_TOBAC (Photosystem II 22 kDa protein, chloroplastic OS=Nicotiana tabacum GN=PSBS PE=2 SV=1)

HSP 1 Score: 204.912 bits (520), Expect = 3.735e-53
Identity = 107/151 (70.86%), Postives = 115/151 (76.16%), Query Frame = 3
Query:  333 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLVGES*QGK 785
            K KVED            KQNELFVGRVAMIGFAASLLGE ITGKGILAQLNLETGIPIYEAEP           GAIGAL DRGKF+D+P  PTGL +AVIPPGK  +SALGL EGGP+F FTK+NELFVGRLAQLGIAFS++GE   GK
Sbjct:   77 KEKVEDGIFGTSGGIGFTKQNELFVGRVAMIGFAASLLGEAITGKGILAQLNLETGIPIYEAEPLLLFFILFNLLGAIGALEDRGKFIDDPAPPTGLDKAVIPPGKGFKSALGLSEGGPLFEFTKANELFVGRLAQLGIAFSIIGEIITGK 227          

HSP 2 Score: 25.409 bits (54), Expect = 3.735e-53
Identity = 10/19 (52.63%), Postives = 14/19 (73.68%), Query Frame = 1
Query:  802 HIETWIPINEIDHLCLFTV 858
            + ET +PINEI+ L LF +
Sbjct:  234 NFETGVPINEIEPLLLFNI 252          

HSP 3 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  387 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 611
            K NELFVGR+A +G A S++GE ITGKG LAQLN ETG+PI E EP            AI      GKFV + +E
Sbjct:  201 KANELFVGRLAQLGIAFSIIGEIITGKGALAQLNFETGVPINEIEPLLLFNIVFFFVAAINP--GTGKFVTDEEE 273          
BLAST of EY753573 vs. ExPASy Swiss-Prot
Match: PSBS_ARATH (Photosystem II 22 kDa protein, chloroplastic OS=Arabidopsis thaliana GN=PSBS PE=1 SV=1)

HSP 1 Score: 205.682 bits (522), Expect = 1.834e-52
Identity = 110/151 (72.85%), Postives = 118/151 (78.15%), Query Frame = 3
Query:  333 KPKVEDXXXXXXXXXXXXKQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDEPTGLGRAVIPPGKSLRSALGLKEGGPIFGFTKSNELFVGRLAQLGIAFSLVGES*QGK 785
            K KVED            K NELFVGRVAMIGFAASLLGE +TGKGILAQLNLETGIPIYEAEP           GAIGALGDRGKFVD+P  PTGL +AVIPPGK++RSALGLKE GP+FGFTK+NELFVGRLAQLGIAFSL+GE   GK
Sbjct:   69 KSKVEDGIFGTSGGIGFTKANELFVGRVAMIGFAASLLGEALTGKGILAQLNLETGIPIYEAEPLLLFFILFTLLGAIGALGDRGKFVDDP--PTGLEKAVIPPGKNVRSALGLKEQGPLFGFTKANELFVGRLAQLGIAFSLIGEIITGK 217          

HSP 2 Score: 22.3274 bits (46), Expect = 1.834e-52
Identity = 10/20 (50.00%), Postives = 14/20 (70.00%), Query Frame = 1
Query:  802 HIETWIPINEIDHLCLFTVS 861
            +IET IPI +I+ L L  V+
Sbjct:  224 NIETGIPIQDIEPLVLLNVA 243          

HSP 3 Score: 70.4774 bits (171), Expect = 1.611e-11
Identity = 39/75 (52.00%), Postives = 46/75 (61.33%), Query Frame = 3
Query:  387 KQNELFVGRVAMIGFAASLLGEGITGKGILAQLNLETGIPIYEAEPXXXXXXXXXXXGAIGALGDRGKFVDEPDE 611
            K NELFVGR+A +G A SL+GE ITGKG LAQLN+ETGIPI + EP            AI      GKF+ +  E
Sbjct:  191 KANELFVGRLAQLGIAFSLIGEIITGKGALAQLNIETGIPIQDIEPLVLLNVAFFFFAAINP--GNGKFITDDGE 263          
The following BLAST results are available for this feature:
BLAST of EY753573 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 5
Match NameE-valueIdentityDescription
PSBS_SPIOL1.005e-5655.93Photosystem II 22 kDa protein, chloroplastic OS=Sp... [more]
PSBS_SOLLC8.388e-5672.55Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_SOLSG2.635e-5470.59Photosystem II 22 kDa protein, chloroplastic OS=So... [more]
PSBS_TOBAC3.735e-5370.86Photosystem II 22 kDa protein, chloroplastic OS=Ni... [more]
PSBS_ARATH1.834e-5272.85Photosystem II 22 kDa protein, chloroplastic OS=Ar... [more]
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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-D11-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753573 ID=EY753573; Name=EY753573; organism=Citrus sinensis; type=EST; length=946bp
CAAGCCCGACCCACTCGTCCGGTGAAACTGCTCGTGCTGGCTTGATAAAT
CAAACAGCGTGACAACATATTCATTCAATATTAATGGCTCAAACTATGCT
GCTCATGTCTGGGGTTTCCACTAGCCACGCAGGAAACTTGAAAAGAGACT
CTTTAGTCACATTTCAAACGCAGATGCTGAGACCTATTTTTTTCTCTCAT
CTTATGTTCAACCCACTCTCTAATGAATCTTTAACTGCTGCTGCGGCTTC
TTCATCATCTAAAGCTTTTTCTACTGTTGCCCTCTTCAAATCTAAAACCA
AAGCTCCACCCAAGACCAAGAAGGTTGAATCAAAGCCAAAAGTTGAGGAT
GGTATCTTTGGGACCTCTGGAGGATTTGGTTTTACAAAGCAAAATGAGCT
CTTTGTTGGTCGTGTTGCCATGATTGGCTTTGCTGCTTCCTTGTTGGGTG
AGGGAATAACTGGGAAGGGGATTCTAGCTCAGTTGAATTTAGAGACCGGA
ATTCCAATCTATGAAGCAGAGCCACTGCTTTTATTTTTCATCTTGTTCAC
CTTGCTTGGAGCAATTGGAGCTTTGGGTGACCGTGGTAAGTTCGTTGATG
AGCCAGATGAGCCCACTGGGCTCGGGAGAGCTGTCATTCCTCCAGGCAAA
AGCTTAAGATCAGCGTTGGGTCTCAAGGAAGGAGGTCCCATATTTGGATT
CACGAAGTCAAACGAGCTGTTTGTGGGAAGATTGGCTCAGTTGGGTATTG
CATTCTCTTTGGTTGGAGAATCATAACAGGGAAAGGAGCTCTAGCCCACC
TCACATTGAGACTTGGATCCCCATCAACGAAATCGACCACTTGTGCCTGT
TCACCGTTTCTTCTTCTTGTTGCCGCTTGAATTCTCGGACTGGTTAATTG
TCCCACATGAAAATGAGAGTTTATAAACCTGGAAGCTGTCCTGTTA
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