EY753561

Overview
NameEY753561
Unique NameEY753561
TypeEST
OrganismCitrus sinensis (Sweet orange)
Sequence length470
Libraries
Library NameType
Sweet orange leaf, field plant Acdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Csv1_Contig10820 contig Csv1_Contig10820:507..976. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1A_ARATH (Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=2 SV=1)

HSP 1 Score: 96.2857 bits (238), Expect = 7.107e-20
Identity = 42/47 (89.36%), Postives = 46/47 (97.87%), Query Frame = 1
Query:    1 SFCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 141
            +F +TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKY+YIPF+
Sbjct:  128 AFLMTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYKYIPFS 174          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1B_ARATH (Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=2 SV=2)

HSP 1 Score: 95.5153 bits (236), Expect = 1.212e-19
Identity = 41/48 (85.42%), Postives = 47/48 (97.92%), Query Frame = 1
Query:    1 SFCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            +F +TFFSVFDVPVFWPILLCYW+VLFVLTMRRQIAHMIK++YIPF+I
Sbjct:  127 AFLMTFFSVFDVPVFWPILLCYWVVLFVLTMRRQIAHMIKHKYIPFSI 174          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1C_ARATH (Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 2.795e-16
Identity = 35/46 (76.09%), Postives = 41/46 (89.13%), Query Frame = 1
Query:    4 FCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFN 141
            F +TFF VFDVPVFWPILL YW++LF LTMR+QI HMIKYRY+PF+
Sbjct:  150 FMMTFFEVFDVPVFWPILLFYWVMLFFLTMRKQIQHMIKYRYVPFS 195          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_YEAST (Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 PE=1 SV=2)

HSP 1 Score: 78.9518 bits (193), Expect = 1.174e-14
Identity = 35/48 (72.92%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 SFCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            S  L+ FS+FD+PVFWPILL Y+I+LF LTMRRQI HMIKYRYIP +I
Sbjct:  131 SLLLSLFSIFDIPVFWPILLMYFILLFFLTMRRQIQHMIKYRYIPLDI 178          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_SACPS (Protein RER1 OS=Saccharomyces pastorianus GN=RER1 PE=3 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 3.417e-14
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    1 SFCLTFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPFNI 144
            S  L+ FS+FD+PVFWPILL Y+++LF LTMRRQI HM+KYRYIP +I
Sbjct:  131 SLVLSLFSIFDIPVFWPILLMYFVLLFFLTMRRQIQHMMKYRYIPLDI 178          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_RAT (Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_PONAB (Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_MOUSE (Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_HUMAN (Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFDAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
BLAST of EY753561 vs. ExPASy Swiss-Prot
Match: RER1_CHICK (Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 6.443e-13
Identity = 31/42 (73.81%), Postives = 37/42 (88.10%), Query Frame = 1
Query:   13 TFFSVFDVPVFWPILLCYWIVLFVLTMRRQIAHMIKYRYIPF 138
            TFF  F+VPVFWPIL+ Y+I+LF +TM+RQI HMIKYRYIPF
Sbjct:  136 TFFEAFNVPVFWPILVMYFIMLFCITMKRQIKHMIKYRYIPF 177          
The following BLAST results are available for this feature:
BLAST of EY753561 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 14
Match NameE-valueIdentityDescription
RER1A_ARATH7.107e-2089.36Protein RER1A OS=Arabidopsis thaliana GN=RER1A PE=... [more]
RER1B_ARATH1.212e-1985.42Protein RER1B OS=Arabidopsis thaliana GN=RER1B PE=... [more]
RER1C_ARATH2.795e-1676.09Protein RER1C OS=Arabidopsis thaliana GN=RER1C PE=... [more]
RER1_YEAST1.174e-1472.92Protein RER1 OS=Saccharomyces cerevisiae GN=RER1 P... [more]
RER1_SACPS3.417e-1468.75Protein RER1 OS=Saccharomyces pastorianus GN=RER1 ... [more]
RER1_RAT6.443e-1373.81Protein RER1 OS=Rattus norvegicus GN=Rer1 PE=2 SV=... [more]
RER1_PONAB6.443e-1373.81Protein RER1 OS=Pongo abelii GN=RER1 PE=2 SV=1[more]
RER1_MOUSE6.443e-1373.81Protein RER1 OS=Mus musculus GN=Rer1 PE=1 SV=1[more]
RER1_HUMAN6.443e-1373.81Protein RER1 OS=Homo sapiens GN=RER1 PE=1 SV=1[more]
RER1_CHICK6.443e-1373.81Protein RER1 OS=Gallus gallus GN=RER1 PE=2 SV=1[more]

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Properties
Property NameValue
Genbank descriptionCS12-C1-001-004-C07-CT.F Sweet orange leaf, field plant A Citrus sinensis cDNA, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>EY753561 ID=EY753561; Name=EY753561; organism=Citrus sinensis; type=EST; length=470bp
AGCTTTTGTTTGACATTCTTTTCTGTGTTTGATGTTCCTGTGTTTTGGCC
TATATTACTTTGTTACTGGATTGTTCTGTTTGTTCTTACAATGAGACGCC
AAATCGCACACATGATCAAATACAGATATATCCCGTTCAACATTGGAAAA
CAGAAGTATGGTGGTAAGAAACCTTCATCAAGTGGCGGTGGCTCCCGTGG
GGACTGAAGCAGAACTTATTCACAGAGCCAGTAGAAAAAGGACTGGATGG
GGATAAAAAAATAGGTTATGGGAAGATATTATAATTGAATTTTTTCCTTT
CAAGGGACATGCACTTGGTTATTATGAATGAAGCTTATAGTAGACATAAA
GTTCAATAGTGCGGGATTGCTAAAATGTTGCAGAATTGAAACTTTAATGT
TTACGCTCATGTTATGAAGATTCCAAGATTGTTGGCAATGTAAAAAAAAA
AAAAAAAAAAAAAAAAAAAA
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